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Add link to pancreas dataset #750

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Oct 8, 2024
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1 change: 1 addition & 0 deletions docs/user.rst
Original file line number Diff line number Diff line change
Expand Up @@ -53,6 +53,7 @@ Datasets
datasets.drosophila
datasets.hspc
datasets.mosta
datasets.pancreas_multiome
datasets.sciplex
datasets.sim_align
datasets.simulate_data
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6 changes: 3 additions & 3 deletions src/moscot/datasets.py
Original file line number Diff line number Diff line change
Expand Up @@ -281,11 +281,11 @@ def pancreas_multiome(
force_download: bool = True,
**kwargs: Any,
) -> Union[mu.MuData, ad.AnnData]: # pragma: no cover
"""Pancreatic endocrinogenesis dataset published with the moscot manuscript :cite:`Klein:23`.
"""Pancreatic endocrinogenesis dataset published with the moscot manuscript :cite:`klein:23`.

The dataset contains paired scRNA-seq and scATAC-seq data of pancreatic cells at embryonic days 14.5, 15.5, and
16.5. The data was preprocessed and filtered as described in the manuscript, the raw data and the full processed
data are available via GEO accession code GSE275562.
data are available via `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi>`_ accession code GSE275562.

Parameters
----------
Expand All @@ -296,7 +296,7 @@ def pancreas_multiome(
force_download
Whether to force-download the data.
kwargs
Keyword arguments for :func:`anndata.read_h5ad` if `rna_only`, else for :func:`mudata.read`.
Keyword arguments for :func:`anndata.io.read_h5ad` if `rna_only`, else for :func:`mudata.read`.

Returns
-------
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