Remove velovi (#1274) #543
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name: CI | |
on: | |
push: | |
branches: [main] | |
pull_request: | |
branches: [main] | |
jobs: | |
# Skip CI if commit message contains `[ci skip]` in the subject | |
init: | |
runs-on: ubuntu-latest | |
outputs: | |
skip: ${{ steps.ci-skip-step.outputs.ci-skip }} | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- id: ci-skip-step | |
uses: mstachniuk/ci-skip@master | |
# Check if pre-commit hooks pass and if README.rst can be converted to HTML | |
linting: | |
needs: init | |
if: ${{ needs.init.outputs.skip == 'false' }} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pre-commit | |
- name: Check pre-commit compatibility | |
run: pre-commit run --all-files --show-diff-on-failure | |
# Run unit tests | |
test: | |
needs: linting | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
python-version: ["3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: pip install -e '.[dev]' | |
- name: Unit tests | |
timeout-minutes: 60 | |
run: python -m pytest --durations=25 --ignore=tests/datasets/test_datasets.py --hypothesis-profile=ci --cov=scvelo -vv | |
test-dataset-downloads: | |
needs: test | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup Python 3.10 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
pip install -e . | |
pip install hypothesis pytest pytest-cov | |
- name: Test dataset downloads | |
timeout-minutes: 60 | |
run: python -m pytest tests/datasets/test_datasets.py -vv |