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fix braun dataset yaml #2910

fix braun dataset yaml

fix braun dataset yaml #2910

name: Create sfaira data-loader templates
on:
push:
branches:
- main
- release
- dev
pull_request:
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
create-templates:
runs-on: ${{ matrix.os }}
if: "!contains(github.event.head_commit.message, '[skip ci]') && !contains(github.event.head_commit.message, '[ci skip]')"
strategy:
matrix:
os: [ubuntu-latest]
env:
PYTHONIOENCODING: utf-8
steps:
- uses: actions/checkout@v2
name: Check out source-code repository
- name: Setup Python
uses: actions/setup-python@v2.1.4
with:
python-version: 3.8
- name: Upgrade and install pip and wheel
run: python -m pip install --upgrade pip wheel
- name: Build sfaira
run: pip install .
- name: Create single_dataset template
run: |
mkdir -p ./d10_1000_j_journal_2022_01_001
echo -e "1\nEinstein, Albert\nX_umap\n10.1000/j.journal.2022.01.001\n\nURL\nURL2\nY2022\nX\n\n\n\n\n\n\n\n\n\n\n\n\nna\nHomo sapiens\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nindex\n\n" | sfaira create-dataloader
sfaira validate-dataloader --doi 10.1000/j.journal.2022.01.001
rm -rf ./d10_1000_j_journal_2022_01_001