fix load function #2925
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name: Create sfaira data-loader templates | |
on: | |
push: | |
branches: | |
- main | |
- release | |
- dev | |
pull_request: | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
create-templates: | |
runs-on: ${{ matrix.os }} | |
if: "!contains(github.event.head_commit.message, '[skip ci]') && !contains(github.event.head_commit.message, '[ci skip]')" | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
env: | |
PYTHONIOENCODING: utf-8 | |
steps: | |
- uses: actions/checkout@v2 | |
name: Check out source-code repository | |
- name: Setup Python | |
uses: actions/setup-python@v2.1.4 | |
with: | |
python-version: 3.8 | |
- name: Upgrade and install pip and wheel | |
run: python -m pip install --upgrade pip wheel | |
- name: Build sfaira | |
run: pip install . | |
- name: Create single_dataset template | |
run: | | |
mkdir -p ./d10_1000_j_journal_2022_01_001 | |
echo -e "1\nEinstein, Albert\nX_umap\n10.1000/j.journal.2022.01.001\n\nURL\nURL2\nY2022\nX\n\n\n\n\n\n\n\n\n\n\n\n\nna\nHomo sapiens\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nindex\n\n" | sfaira create-dataloader | |
sfaira validate-dataloader --doi 10.1000/j.journal.2022.01.001 | |
rm -rf ./d10_1000_j_journal_2022_01_001 |