fox loader

theislab · Nov 10, 2023 · 06a97c8 · 06a97c8
1 parent 40336f6
commit 06a97c8
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/...taloaders/loaders/d10_1038_s41588_019_0489_5/homosapiens_x_2019_x_mcfalinefigueroa_001.py b/...taloaders/loaders/d10_1038_s41588_019_0489_5/homosapiens_x_2019_x_mcfalinefigueroa_001.py
@@ -18,8 +18,8 @@ def load(data_dir, sample_fn, **kwargs):
         fn_meta = os.path.join(data_dir, sample_fn + "_metadata.tsv.gz")
     adata = sc.readwrite.read_10x_mtx(data_dir, prefix=sample_fn + "_")
     # Meta data files all look different, give all the same column space:
-    if sample_fn == "GSE114687_CROPSeq_pseudospace":
-        tab = pd.read_csv(fn_meta, header=None, index_col=None, sep="\t")
+    if sample_fn == "GSE114687_CROPseq_pseudospace":
+        tab = pd.read_csv(os.path.join(data_dir, "GSE114687_CROPSeq_pseudospace_metadata.tsv.gz"), header=None, index_col=None, sep="\t")
         tab["location"] = tab.iloc[:, 15].values
         adata.obs = tab
     elif sample_fn == "GSE114687_HuMEC":

diff --git a/...loaders/loaders/d10_1038_s41588_019_0489_5/homosapiens_x_2019_x_mcfalinefigueroa_001.yaml b/...loaders/loaders/d10_1038_s41588_019_0489_5/homosapiens_x_2019_x_mcfalinefigueroa_001.yaml
@@ -1,7 +1,7 @@
 dataset_structure:
     dataset_index: 1
     sample_fns:
-        - "GSE114687_CROPSeq_pseudospace"
+        - "GSE114687_CROPseq_pseudospace"
         - "GSE114687_HuMEC"
         - "GSE114687_pseudospace"
 dataset_wise: