Code

Improve CLI documentation#320

Code

Merged

davidsebfischer merged 23 commits intodevtheislab/sfaira:devfrom bug/cli_documentationtheislab/sfaira:bug/cli_documentationCopy head branch name to clipboardJul 26, 2021

+281-230

Commits

Commits on Jun 15, 2021

• improved error reporting in annotate

  davidsebfischer

  committed
  8e11bf6

• fixed bug

  davidsebfischer

  committed
  1a8fdf1

• improved file not found reporting in annotate

  davidsebfischer

  committed
  d8e8d69

• improved testing

  davidsebfischer

  committed
  b390270

Commits on Jun 29, 2021

• Merge branch 'dev' into bug/cli_documentation

  le-ander

  committed
  55044ca

Commits on Jul 1, 2021

• improve CLI

  le-ander

  committed
  2d06050

• fix imports

  le-ander

  committed
  de229cf

• update template creation workflow

  le-ander

  committed
  f586e2e

• fix doi promting

  le-ander

  committed
  895ad67

• update download urls

  le-ander

  committed
  0879df3

• also create empty dir for datasets when creating a dataloader with the cli

  le-ander

  committed
  e3dba4f

• fix data path handling in CLI

  le-ander

  committed
  c3a5502

• remove double promting of doi in CLI annotator

  le-ander

  committed
  21cbc96

• fix cli annotate bug [skip ci]

  le-ander

  committed
  1e7f75c

• remove misc vom cookiecutter yaml templates (breaks cli)

  le-ander

  committed
  1421139

• fix disease default in cli

  le-ander

  committed
  5ac1398

• improve cli documentation

  le-ander

  committed
  f4d1b7e

• fix test-dataloader [skip ci]

  le-ander

  committed
  61020e5

Commits on Jul 21, 2021

• Merge branch 'dev' into bug/cli_documentation

  davidsebfischer

  committed
  cf71e2f

• fixed lint

  davidsebfischer

  committed
  b47b154

Commits on Jul 26, 2021

• Merge branch 'dev' into bug/cli_documentation

  davidsebfischer

  committed
  c90c8cb

• Merge branch 'dev' into bug/cli_documentation

  davidsebfischer

  committed
  de09580

• fix CI (#339)

  Show description for 488539a
  

  Zethson

  and

  davidsebfischer

  authored
  488539a