Code

Feature/complete tsv maps#449

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Merged

davidsebfischer merged 28 commits intodataloader_d10_1101_2021_07_19_452954theislab/sfaira:dataloader_d10_1101_2021_07_19_452954from feature/complete_tsv_mapstheislab/sfaira:feature/complete_tsv_mapsCopy head branch name to clipboardJan 3, 2022

+2,964-2,163

Commits

Commits on Oct 22, 2021

• Merge pull request #397 from theislab/release

  Show description for 1fef2d2
  davidsebfischer

  authored
  1fef2d2

Commits on Nov 16, 2021

• added blocked generator (#383)

  Show description for 7da43c7
  

  4 peopleauthored
  7da43c7

Commits on Nov 19, 2021

• bug fix for return_dense kwarg for h5ad generator (#411)

  felix0097

  authored
  aeaa60f

Commits on Nov 26, 2021

• performance fix for loading target universe (#409)

  Show description for cca997f
  felix0097

  authored
  cca997f

• Bug fixes and performance improvements for DistributedStoreSingleFeatureSpace and split_idx function (#419)

  Show description for 0de574d
  felix0097

  authored
  0de574d

• cache migration to settings container (#418)

  Show description for 5684f09
  le-ander

  authored
  5684f09

• Merge pull request #420 from theislab/dev

  Show description for bafe80c
  le-ander

  authored
  bafe80c

Commits on Nov 29, 2021

• add manifest file (#424)

  Show description for 52ada8c
  le-ander

  authored
  52ada8c

• fix data store subsetting regression introduced in 0.3.8 and cleanup deprecated files (#425)

  Show description for c628034
  le-ander

  authored
  c628034

• fix synapse data download interface (#426)

  le-ander

  authored
  963d043

• Merge pull request #427 from theislab/dev

  Show description for 09f83d6
  le-ander

  authored
  09f83d6

• Merge pull request #428 from theislab/release

  Show description for dc146da
  le-ander

  authored
  dc146da

Commits on Dec 6, 2021

• fix NA to empty template values (#434)

  Show description for bafc85e
  Zethson

  authored
  bafc85e

• added bug fix for subsetting + .X method of DistributedstoreAnndata (#431)

  felix0097

  authored
  05a12ae

Commits on Dec 9, 2021

• Feature/trainer test paths (#437)

  Show description for 6a1ba1f
  davidsebfischer

  authored
  6a1ba1f

Commits on Dec 13, 2021

• do not check md5 of weighs if None (#442)

  Hrovatin

  authored
  e71ad11

Commits on Dec 14, 2021

• added fix to reduce size of pickle files (#440)

  felix0097

  authored
  ff26e60

• Dataset/d10 1016 j cell 2020 08 001 (#402)

  Show description for b6f66a5
  

  soerenab

  and

  davidsebfischer

  authored
  b6f66a5

Commits on Dec 17, 2021

• improved dask array concatenatin for .X method (#444)

  felix0097

  authored
  551ce13

Commits on Dec 20, 2021

• Rewrite test_store.py script (#436)

  felix0097

  authored
  31913a2

Commits on Jan 3, 2022

• Feature/dno doi luecken (#439)

  Show description for 814fa29
  davidsebfischer

  authored
  814fa29

• adapted new yaml format for d10_1101_2021_07_19_452954

  davidsebfischer

  committed
  651d083

• Merge branch 'dev' into feature/complete_tsv_maps

  davidsebfischer

  committed
  179b9ba

• adapted yaml template in cli to 1.1

  davidsebfischer

  committed
  35e953f

• draft of new ontology map interface

  davidsebfischer

  committed
  bacecc0

• annotated data loader and fixed bugs with new tsv handling

  Show description for a4eadd3
  davidsebfischer

  committed
  a4eadd3

• fixed lint

  davidsebfischer

  committed
  98083ec

• fixed lint

  davidsebfischer

  committed
  2b084af