Code

Preparing release 3.10#533

Code

Merged

davidsebfischer merged 31 commits intoreleasetheislab/sfaira:releasefrom devtheislab/sfaira:devCopy head branch name to clipboardFeb 9, 2022

+8,409-3,785

Commits

Commits on Nov 29, 2021

• Merge pull request #428 from theislab/release

  Show description for dc146da
  le-ander

  authored
  dc146da

Commits on Dec 6, 2021

• fix NA to empty template values (#434)

  Show description for bafc85e
  Zethson

  authored
  bafc85e

• added bug fix for subsetting + .X method of DistributedstoreAnndata (#431)

  felix0097

  authored
  05a12ae

Commits on Dec 9, 2021

• Feature/trainer test paths (#437)

  Show description for 6a1ba1f
  davidsebfischer

  authored
  6a1ba1f

Commits on Dec 13, 2021

• do not check md5 of weighs if None (#442)

  Hrovatin

  authored
  e71ad11

Commits on Dec 14, 2021

• added fix to reduce size of pickle files (#440)

  felix0097

  authored
  ff26e60

• Dataset/d10 1016 j cell 2020 08 001 (#402)

  Show description for b6f66a5
  

  soerenab

  and

  davidsebfischer

  authored
  b6f66a5

Commits on Dec 17, 2021

• improved dask array concatenatin for .X method (#444)

  felix0097

  authored
  551ce13

Commits on Dec 20, 2021

• Rewrite test_store.py script (#436)

  felix0097

  authored
  31913a2

Commits on Jan 3, 2022

• Feature/dno doi luecken (#439)

  Show description for 814fa29
  davidsebfischer

  authored
  814fa29

• 10.1101/2021.07.19.452954 and data loader tsv update

  Show description for 2727158
  felix0097

  authored
  2727158

Commits on Jan 4, 2022

• datal loader 10.1038/s41467-021-27619-4 (desribed in #450)

  davidsebfischer

  authored
  f00bd42

• Issue template for data loader request

  davidsebfischer

  authored
  5de1f14

Commits on Jan 5, 2022

• d10_1038_s41586_019_1631_3: updated annotation and moved to format 1.1 (#467)

  davidsebfischer

  authored
  24866f4

Commits on Jan 10, 2022

• Rewrite batch schedule classes (#448)

  Show description for f1b5139
  felix0097

  authored
  f1b5139

Commits on Jan 12, 2022

• Torch data adaptor (#433)

  Show description for 9154c47
  

  davidsebfischer

  and

  felix0097

  authored
  9154c47

Commits on Jan 21, 2022

• bug fix for move_to_memory method of CartDask class (#475)

  felix0097

  authored
  ecb781f

• D10 1038 s41467 020 15543 y (#462)

  Show description for 60b0ce1
  lauradmartens

  authored
  60b0ce1

• Feature: Option to shuffle datasets before writing dao stores (#473)

  Show description for b095601
  felix0097

  authored
  b095601

• Feature: match zarr chunks for randomized_batch_schedule=True for CartDask (#476)

  Show description for 8ce35b3
  felix0097

  authored
  8ce35b3

• Create dataloader (#468)

  lauradmartens

  authored
  019e066

Commits on Jan 26, 2022

• bug fix - added .compute for .x method in DaskCart (#479)

  felix0097

  authored
  d07d8d3

• Feature: Save .obs data as categorical dtype (#478)

  Show description for 879c750
  felix0097

  authored
  879c750

Commits on Jan 27, 2022

• Bug-Fix: d10_1038_s41467_021_27619_4 DataLoader (#480)

  Show description for 803aa98
  felix0097

  authored
  803aa98

Commits on Jan 28, 2022

• fixed gtf interface for newer ensembl releases for genes without symbol (#484)

  davidsebfischer

  authored
  8b62971

Commits on Feb 3, 2022

• add wheel to python build CI to avoid legacy setup.py install (#493)

  le-ander

  authored
  af65cc3

Commits on Feb 7, 2022

• Feature: add shuffle buffer to DaskCart (#474)

  felix0097

  authored
  9185c51

• Refactor estimator code to support estimators for torch models (#485)

  Show description for cbaaf02
  felix0097

  authored
  cbaaf02

Commits on Feb 9, 2022

• Improvements to CLI usability (#452)

  Show description for 8f4bf84
  

  4 peopleauthored
  8f4bf84

• added new figures (#538)

  Show description for c186092
  davidsebfischer

  authored
  c186092

• activated cellxgene caching for unit tests (#539)

  davidsebfischer

  authored
  11e8705