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aneuploidy

Here are 6 public repositories matching this topic...

AntonioDeFalco / SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

scrna-seq single-cell copy-number-variation copynumber tumor-evolution tumor-heterogeneity aneuploidy scrna-seq-analysis subclone-identification tumor-classification clonal-evolution scrna-pipeline subclonal-deconvolution microenvironment clonal-analysis

Updated Jun 11, 2024
HTML

esteinig / cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting

production metagenomics public-health diagnostics illumina brain aneuploidy central-nervous-system

Updated Nov 26, 2024
Rust

VivianWei1328 / STORK_test

Code for STORK. Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care. “Copyright © 2022 The Trustees of Columbia University in the City of New York. All Rights Reserved.”

nanopore stork nanopore-sequencing aneuploidy

Updated Aug 17, 2022

Mike-Chester / aneuploidy_dynamics

Python script to model mixed disomic and tetrasomic inheritance in a population of allotetraploid plants.

meiosis allopolyploid aneuploidy

Updated Aug 27, 2019
Python

TWvR / AneufinderFileFilter

Easy filtering of Aneufinder model files based on QC measurements

aneuploidy aneufinder sckaryo-seq

Updated Feb 6, 2023
R

p4rkerw / Wilson_GBio_2024

Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease

kidney single-cell copy-number-variation single-cell-genomics single-cell-rna-seq single-cell-atac-seq aneuploidy spatial-transcriptomics ckd single-cell-multiomics loss-of-y-chromosome mosaic-chromosomal-alterations somatic-mosaicism

Updated Feb 16, 2024
R

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