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subclone-identification

Here are 5 public repositories matching this topic...

AntonioDeFalco / SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

scrna-seq single-cell copy-number-variation copynumber tumor-evolution tumor-heterogeneity aneuploidy scrna-seq-analysis subclone-identification tumor-classification clonal-evolution scrna-pipeline subclonal-deconvolution microenvironment clonal-analysis

Updated Jun 11, 2024
HTML

caravagnalab / mobster

Model-based subclonal deconvolution from bulk sequencing.

mixture-model pareto-distributions beta-distribution model-based-clustering subclone-identification

Updated Nov 9, 2023
HTML

keyuan / ccube

Bayesian mixture models for estimating and clustering cancer cell fractions

variational-inference cancer-evolution subclone-identification intratumor-heterogeneity

Updated Dec 20, 2022
R

zengliX / SIFA

SIFA: identify tumor subclones and infer phylogenetic tree from WGS data

bayesian-inference tumor-evolution tumor-heterogeneity subclone-identification

Updated May 18, 2018
R

CRUST

Subhayan18 / CRUST

R package for clonal deconvolution

phylogenetics clonality deconvolution subclone-identification vaf-distribution subclone

Updated Jul 8, 2021
R

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