Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

Align short RNA seqeuncing reads to determine the length of of overhang

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

A pipeline to run mapping, mash screen and assembly methods for pATLAS.

Script to obtain plasmid id from WGS data using bowtie2 to map

This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.

Align reads over a reference genome, filter aligned-reads, and mark duplicates

Snakemake workflow used to call peaks with Macs2