eDNA metabarcoding pipeline
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Dec 18, 2024 - Python
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environmental-dna
Here are 12 public repositories matching this topic...
An open-source data management system for tracking environmental DNA samples and metadata
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Aug 8, 2024 - Python
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
bioinformatics biology bioinformatics-pipeline molecular-biology dna-sequences bioinformatics-scripts environmental-dna dna-barcode
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May 3, 2021 - Shell
This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.
machine-learning random-forest predictive-modeling qpcr environmental-dna base-pair-mismatches assay-specificity assay-generality
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Jun 9, 2023 - R
Comparison between eDNA and trawling for fish biodiversity metrics
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Oct 4, 2023 - R
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
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Apr 22, 2020 - R
Calculate optimal combination of eDNA barcodes based on amplicon sequences
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Jun 18, 2024 - Python
A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.
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Nov 16, 2024 - TypeScript
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Sep 4, 2024 - Python
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Apr 24, 2023 - R
Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)
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Nov 15, 2024 - C
desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics
bioinformatics edna genome-analysis golang-application environmental-dna genotyping-by-sequencing hybseq-data
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Sep 29, 2024 - Go
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