A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

Three bacterial GWAS methods all rolled into one easy-to-use R package

The multivariate MArginal ePIstasis Test

R package to perform data pre-processing for more informative bacterial GWAS

Tool for genome wide association studies with Bayesian inference and statistical learning

MendelianRandomization is an R package for assessing causal relationships using genetic variants as instrumental variables

mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)

Flashfm: multi-trait fine-mapping that uses GWAS summary statistics from several traits. Updated and more flexible wrapper functions available at jennasimit.github.io/flashfmZero/

MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.

Modified transmission disequilibrium test (TDT) for GWAS using case-parent/control-parent trios.

This is a fork from qqman package

Scripts of Final Master Project

Latent factor GWAS; Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)

Clean and Process GWAS Results for the Drosophila Genetic Reference Panel

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.

Perform GWAS on Phenotype Measurements Subject to Limit of Detection for Biobank-Scale Dataset