Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees)
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Updated
Dec 17, 2024 - Shell
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hybseq-data
Here are 5 public repositories matching this topic...
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
science data-science bioinformatics pipeline genetics ngs bioinformatics-pipeline phylogenetics data-analysis orthologues phylogenomic transcriptome phylogenomics molecular-biology bioinformatics-analysis ngs-analysis taxonomic-classification phylogenomics-pipeline ngs-pipeline hybseq-data
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Updated
Feb 16, 2024 - TeX
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
data-science bioinformatics genomics ngs alignments bioinformatics-pipeline data-analysis phylogenomics molecular-biology bioinformatics-analysis bioinformatics-scripts ngs-pipeline hybseq-data species-tree metacentrum paralogs ngs-scripts hybpiper gene-tree hybseq-scripts
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Updated
Sep 17, 2024 - Shell
desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics
bioinformatics edna genome-analysis golang-application environmental-dna genotyping-by-sequencing hybseq-data
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Sep 29, 2024 - Go
Materials for course about processing HybSeq data on computing grids
learning bioinformatics terminal course scripting phylogenetic-trees data-analysis command-line-tool data-analyses bash-script bioinformatics-data computing phylogenomics shell-scripting bioinformatics-analysis species-trees grid-computing bioinformatics-scripts hybseq-data metacentrum
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Updated
Jun 17, 2024 - TeX
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