COBRApy is a package for constraint-based modeling of metabolic networks.
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
CarveMe: genome-scale metabolic model reconstruction
single cell Flux Estimation Analysis (scFEA) Try the below web server!
Multi-dimensional, trans-omics metabolic maps.
Visualization and analysis platform for metabolic data and network pattern recognition
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
framed: a metabolic modeling package for python
A Python parser for the BRENDA database
Simple metabolic calculator to weight loss
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
R package to Import and Modify SVG (XML) Graphic Files
Open source genome-scale metabolic models of human and model animals
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
A python library for single-cell metabolism data analysis.
Deep hybrid modeling of bioreactor cell culture data using Long Short-Term Memory (LSTM) networks combined with first principles equations
Teaching materials for SymbNET course: from MAGs to GEMs
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