R package to Import and Modify SVG (XML) Graphic Files
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Nov 1, 2024 - R
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metabolism
Here are 25 public repositories matching this topic...
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
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Jan 21, 2022 - R
An R package to find the gaps in metabolic networks, and fill it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also include the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database.
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Dec 5, 2020 - R
Repository associated with Jenior ML, et al. (2018). mSphere.
machine-learning metagenomics metabolism metabolomics infection metatranscriptomics reproducible-paper clostridium-difficile colonization-resistance
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Jul 17, 2018 - R
A simple package to implement weighted regression on dissolved oxygen time series
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Jun 7, 2024 - R
An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in different metabolic scenarios was included. This is an implementation of the algorithm described by Lee et al. (2012) in DOI: 10.1186/1752-0509-6-73.
bioinformatics gene-expression metabolism metabolic-models metabolic-network fba-fluxes flux-balance-analysis
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May 2, 2017 - R
An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.
cran bioinformatics metabolism mass-balance stoichiometric-reactions metabolic-models charge-balance sbml minval
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May 18, 2022 - R
Paper - Physiology can predict animal activity, exploration, and dispersal
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Jul 13, 2022 - R
Materials for evaluating DO detiding with weighted regression
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May 24, 2021 - R
Perform multiple night time regressions on O2 data to obtain the gas transfer velocity in streams. It saves the best fit for every day of data
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Jan 9, 2019 - R
All code and data for the manuscript "TITLE HERE"
metabolism metabolic-theory-of-ecology functional-response predator-prey-interactions panulirus-interruptus
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Jun 3, 2022 - R
case studies for removing tidal signal from DO time series
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May 19, 2015 - R
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Dec 12, 2019 - R
metabolic pathway modeling based on gene expression
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Dec 8, 2023 - R
shiny app for correlations between tide and metabolism with different windows
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May 29, 2020 - R
R package for single-station stream ecosystem metabolism estimation
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Jul 23, 2020 - R
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Sep 28, 2023 - R
Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
cancer monte-carlo-simulation metabolism transcriptome renal immune tcell semi-supervised-clustering tumor-immunogenicity gene-set-enrichment-analysis immune-checkpoint
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Mar 20, 2023 - R
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