Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics

Nextflow workflow for basic RepliSeq data processing

Nextflow wrapper for the dragonflye assembler, with additional QC

Generate simulated oxford nanopore reads from a reference sequence

A nextflow-based workflow for running ncov-tools

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

amazon aws batch implementation of nextflow/rnaseq-encode-nf tutorial

Collect basic sequence QC metrics from nanopore reads