Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
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Updated
Oct 20, 2024 - Python
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Assembly and intrahost/low-frequency variant calling for viral samples
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Unofficial client library to get data from Huawei router
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals
Wrapper to read fast5, slow5, blow5 and pod5 files.
Wrapper to read fast5 and pod5 files.
Magnipore: Differential single nucleotide changes of ONT signals
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Get L. pneumophila ST from long-read or hybrid assemblies.
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