Visualization of Functional Enrichment Result
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Dec 20, 2024 - R
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pathway-analysis
Here are 98 public repositories matching this topic...
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection
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Jul 7, 2022 - Python
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
gui r shiny reproducible-research gene-expression data-visualization bioconductor transcriptome user-friendly data-exploration transcriptomics rna-seq-analysis pathway-analysis rna-seq-data bioconductor-package functional-enrichment-analysis
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Dec 19, 2024 - R
MSigDB gene sets for multiple organisms in a tidy data format
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Mar 14, 2023 - R
R package for pathway analysis in scRNA-seq data
r-package transcriptomics single-cell pathway-analysis differential-expression single-cell-rna-seq gene-signatures
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Aug 17, 2024 - R
Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C
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Sep 12, 2020 - Jupyter Notebook
A tutorial for pathway visualization using tidyverse, igraph, and ggraph
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Oct 26, 2024
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
graphviz bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis cancer-pathways
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Mar 18, 2024 - TypeScript
A web application to visualize and edit pathway models
visualization editor bioinformatics biology layout systems-biology pathways network-visualization pathway-analysis newt web-based-visualization sbml sbgn sif pathway-models celldesigner
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Dec 10, 2024 - JavaScript
A project for exploring differentially active signaling paths related to proteomics datasets
bioinformatics computational-biology proteomics pathways phosphoproteomics causality-analysis pathway-analysis
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Oct 22, 2024 - Java
Differential gene expression analysis and pathway analysis of RNAseq data
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Dec 13, 2024 - Nextflow
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
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Feb 1, 2024 - Python
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
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Nov 21, 2018 - Java
Disease pathways in the human interactome
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Mar 20, 2018 - Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
bioinformatics bioinformatics-pipeline pathway-analysis reactome molecular-biology bioinformatics-analysis protein-protein-interaction bioinformatics-scripts biotechnology biological-networks biotech pathway-models bioinformatics-tool reactome-pathway pathway-enrichment-analysis
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Oct 12, 2024 - Python
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering
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Oct 30, 2020 - Perl
Harmonizing pathway databases using Biological Expression Language (BEL)
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Jul 1, 2024 - Python
A manually curated database of human gut metabolic modules.
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Jul 27, 2018
An R package for multi-dimensional pathway enrichment analysis
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Nov 28, 2024 - R
GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)
visualization flask rna-seq genomics ngs next-generation-sequencing protein omics single-cell pathway-analysis omics-data-integration bulk-rna-seq multiomics
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Oct 29, 2024 - SCSS
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