Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes

This repo hosts several scripts developed for data processing related to PHASTER outputs that will be included in the manuscript in preparation about Bacillus tequilensis genome