Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

useful bash one-liners and scripts

sysadmin tasks made easier

script to convert bam2cram and reverse using find and samtools

Sequencing of unculturable plant pathogens

FastEAR - Fast(er) Extraction of Alignment Regions from FASTA

Basic transcriptome assembly using Trinity and TrinityDeNovo.

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Multi-class classification of drug resistance in MTB clinical isolates

Multi-class classification of drug resistance in MTB clinical isolates