A collection of reusable WDL tasks. Category:Other
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Jan 10, 2025 - WDL
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wdl
Here are 59 public repositories matching this topic...
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
workflow bioinformatics genomics workflow-engine computational-biology next-generation-sequencing wdl cwl workflows cromwell wdl-workflow cwl-workflow bioinformatics-workflows stjudecloud
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Jan 21, 2025 - WDL
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
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Mar 10, 2023 - WDL
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
pipeline somatic-variants wdl structural-variation germline-variants variantcalling multisample gatk4 gatk-bestpractices
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May 4, 2023 - WDL
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
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Jan 8, 2024 - WDL
A pipeline for somatic variantcalling. Category:Single-Sample
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Aug 22, 2022 - WDL
Broad fungal method repository
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Nov 14, 2023 - WDL
bioinformatics pipelines
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Mar 14, 2023 - WDL
Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.
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Apr 19, 2023 - WDL
MobidicWDL workflows
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Jan 13, 2025 - WDL
WDL tasks for commonly used BFX tools
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Oct 31, 2024 - WDL
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
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Jan 15, 2025 - WDL
Workflow for metagenome assembly
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Dec 14, 2024 - WDL
WDL-based pipelines
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Jul 6, 2021 - WDL
A BioWDL workflow for gathering QC metrics on and prepocessing FASTQ files. Category:Single-Sample
workflow bioinformatics quality-control pipeline next-generation-sequencing bioinformatics-pipeline wdl fastq
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May 1, 2023 - WDL
A repository for showcasing my knowledge of the wdl programming language, and continuing to learn the language.
education collection knowledge article gplv3 learn wdl md txt gpl3 seanpm2001 seanpm2001-education seanpm2001-learn wdl-lang wdl-language learn-wdl learn-wdl-lang learn-wdl-language wdl-collection
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Aug 2, 2022 - WDL
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
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Nov 27, 2024 - WDL
The WDL Programming language IDE submodule for SNU Programming Tools.
web-development programming web-ide gplv3 ide wdl md txt snu gpl3 snu-2d snu-programming-tools snu-development snu-2d-programming-tools snuprogrammingtools snu2dprogrammingtools wdl-lang wdl-language snu-2d-programmingotools
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Sep 21, 2022 - WDL
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