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Feature/singularity addition #686

Merged
merged 10 commits into from
Mar 4, 2022
Merged

Feature/singularity addition #686

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6a8dd6c
Create singularity.sh
EdwardSnyder-NOAA Feb 25, 2022
f0da957
added machine/sing script for review
jkbk2004 Feb 28, 2022
6a92b4f
added singularity machine value
jkbk2004 Feb 28, 2022
a767c9e
fixed mpirun command name and options: singularity
jkbk2004 Mar 1, 2022
ff2b582
cleaned up singularity script
EdwardSnyder-NOAA Mar 1, 2022
59c51d7
Merge branch 'develop' into feature/singularity-addition
EdwardSnyder-NOAA Mar 2, 2022
3218a57
Update valid_param_vals.sh
EdwardSnyder-NOAA Mar 2, 2022
6e39b30
Update singularity.sh
EdwardSnyder-NOAA Mar 2, 2022
3f31f27
Update singularity.sh
EdwardSnyder-NOAA Mar 3, 2022
027d9bd
Update singularity.sh
EdwardSnyder-NOAA Mar 4, 2022
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79 changes: 79 additions & 0 deletions ush/machine/singularity.sh
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Original file line number Diff line number Diff line change
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#!/bin/bash
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function file_location() {

# Return the default location of external model files on disk

local external_file_fmt external_model location

external_model=${1}
external_file_fmt=${2}

case ${external_model} in

"*")
print_info_msg"\
External model \'${external_model}\' does not have a default
location. Please set a user-defined file location."
;;

esac
echo ${location:-}

}


EXTRN_MDL_SYSBASEDIR_ICS=${EXTRN_MDL_SYSBASEDIR_ICS:-$(file_location \
${EXTRN_MDL_NAME_ICS} \
${FV3GFS_FILE_FMT_ICS})}
EXTRN_MDL_SYSBASEDIR_LBCS=${EXTRN_MDL_SYSBASEDIR_LBCS:-$(file_location \
${EXTRN_MDL_NAME_LBCS} \
${FV3GFS_FILE_FMT_ICS})}

# System scripts to source to initialize various commands within workflow
# scripts (e.g. "module").
if [ -z ${ENV_INIT_SCRIPTS_FPS:-""} ]; then
ENV_INIT_SCRIPTS_FPS=( "/usr/share/lmod/6.6/init/profile" )
fi

# Commands to run at the start of each workflow task.
PRE_TASK_CMDS='{ ulimit -s unlimited; ulimit -a; }'

# Architecture information
WORKFLOW_MANAGER="rocoto"
NCORES_PER_NODE=${NCORES_PER_NODE:-40}
SCHED=${SCHED:-"slurm"}
PARTITION_DEFAULT=${PARTITION_DEFAULT:-""}
QUEUE_DEFAULT=${QUEUE_DEFAULT:-"batch"}
PARTITION_HPSS=${PARTITION_HPSS:-"service"}
QUEUE_HPSS=${QUEUE_HPSS:-"batch"}
PARTITION_FCST=${PARTITION_FCST:-""}
QUEUE_FCST=${QUEUE_FCST:-"batch"}

# UFS SRW App specific paths
FIXgsm=${FIXgsm:-"/contrib/global/glopara/fix/fix_am"}
FIXaer=${FIXaer:-"/contrib/global/glopara/fix/fix_aer"}
FIXlut=${FIXlut:-"/contrib/global/glopara/fix/fix_lut"}
TOPO_DIR=${TOPO_DIR:-"/contrib/global/glopara/fix/fix_orog"}
SFC_CLIMO_INPUT_DIR=${SFC_CLIMO_INPUT_DIR:-"/contrib/global/glopara/fix/fix_sfc_climo"}
FIXLAM_NCO_BASEDIR=${FIXLAM_NCO_BASEDIR:-"/needs/to/be/specified"}

RUN_CMD_SERIAL="time"
RUN_CMD_UTILS='mpirun -np $nprocs --oversubscribe'
RUN_CMD_FCST='mpirun -n ${PE_MEMBER01} --oversubscribe'
RUN_CMD_POST='mpirun -np $nprocs --oversubscribe'

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# MET Installation Locations
MET_INSTALL_DIR=""
METPLUS_PATH=""
CCPA_OBS_DIR=""
MRMS_OBS_DIR=""
NDAS_OBS_DIR=""
MET_BIN_EXEC=""

# Test Data Locations
TEST_PREGEN_BASEDIR=""
TEST_COMINgfs=""
TEST_EXTRN_MDL_SOURCE_BASEDIR=""
TEST_ALT_EXTRN_MDL_SYSBASEDIR_ICS=""
TEST_ALT_EXTRN_MDL_SYSBASEDIR_LBCS=""
2 changes: 1 addition & 1 deletion ush/valid_param_vals.sh
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Expand Up @@ -4,7 +4,7 @@
valid_vals_RUN_ENVIR=("nco" "community")
valid_vals_VERBOSE=("TRUE" "true" "YES" "yes" "FALSE" "false" "NO" "no")
valid_vals_DEBUG=("TRUE" "true" "YES" "yes" "FALSE" "false" "NO" "no")
valid_vals_MACHINE=("WCOSS_DELL_P3" "HERA" "ORION" "JET" "ODIN" "CHEYENNE" "STAMPEDE" "LINUX" "MACOS")
valid_vals_MACHINE=("WCOSS_DELL_P3" "HERA" "ORION" "JET" "ODIN" "CHEYENNE" "STAMPEDE" "LINUX" "MACOS" "SINGULARITY")
valid_vals_SCHED=("slurm" "pbspro" "lsf" "lsfcray" "none")
valid_vals_FCST_MODEL=("ufs-weather-model" "fv3gfs_aqm")
valid_vals_WORKFLOW_MANAGER=("rocoto" "none")
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