Stoch updates

.gitmodules

@@ -1,7 +1,7 @@
 [submodule "FV3"]
   path = FV3
-  url = https://github.com/NOAA-EMC/fv3atm
-  branch = develop
+  url = https://github.com/pjpegion/fv3atm
+  branch = cld_perts
 [submodule "NEMS"]
   path = NEMS
   url = https://github.com/NOAA-EMC/NEMS
@@ -16,8 +16,8 @@
   branch = develop
 [submodule "stochastic_physics"]
   path = stochastic_physics
-  url = https://github.com/noaa-psd/stochastic_physics
-  branch = master
+  url = https://github.com/pjpegion/stochastic_physics
+  branch = ocn_stoch
 [submodule "CMakeModules"]
   path = CMakeModules
   url = https://github.com/NOAA-EMC/CMakeModules

CMakeLists.txt

@@ -139,56 +139,27 @@ endif()
 ###############################################################################
 ### FMS
 ###############################################################################
-include(fms_files.cmake)
-add_library(fms ${fms_src_files} ${fms_headers})
-
-list(APPEND _fms_defs_public use_libMPI
-                             use_netCDF
-                             GFS_PHYS
-                             INTERNAL_FILE_NML)
-if(QUAD_PRECISION)
-  list(APPEND _fms_defs_public ENABLE_QUAD_PRECISION)
-endif()
+set(GFS_PHYS ON CACHE BOOL "Enable GFS Physics")
+if(NOT 32BIT)
+   set(64BIT ON CACHE BOOL "Enable 64-bit")
 
-# check gettid
-include(CheckFunctionExists)
-check_function_exists(gettid HAVE_GETTID)
-if(HAVE_GETTID)
-  list(APPEND _fms_defs_public HAVE_GETTID)
 endif()
-
-target_compile_definitions(fms PUBLIC "${_fms_defs_public}")
-
-if(32BIT)
-  list(APPEND _fms_defs_private OVERLOAD_R4
-                                OVERLOAD_R8)
+if(NOT QUAD_PRECISION)
+  set(ENABLE_QUAD_PRECISION OFF CACHE BOOL "Enable Quad-precision")
 endif()
 
-target_compile_definitions(fms PRIVATE "${_fms_defs_private}")
-
-target_include_directories(fms PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/include>
-                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms>
-                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms2_io/include>
-                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/FMS/mod>
-                                      $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/mpp/include>)
-target_include_directories(fms INTERFACE
-                                      $<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/include>
-                                      $<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/mod>)
-target_link_libraries(fms PUBLIC MPI::MPI_Fortran
-                                 NetCDF::NetCDF_Fortran)
-if(OpenMP_Fortran_FOUND)
-  target_link_libraries(fms PRIVATE OpenMP::OpenMP_Fortran)
+add_subdirectory(FMS)
+
+if(32BIT) 
+   add_library(fms ALIAS fms_r4)
+else()
+   add_library(fms ALIAS fms_r8)
 endif()
-set_target_properties(fms PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS)
-set_target_properties(fms PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod)
-set_target_properties(fms PROPERTIES PUBLIC_HEADER "${fms_headers}" )
 
 ###############################################################################
 ### stochastic_physics
 ###############################################################################
-if(NOT DATM)
   add_subdirectory(stochastic_physics)
-endif()
 
 ###############################################################################
 ### FV3 or Data Atmosphere
@@ -291,7 +262,7 @@ endif()
 target_include_directories(ufs INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
                                          $<INSTALL_INTERFACE:mod>)
 
-target_link_libraries(ufs PUBLIC esmf)
+target_link_libraries(ufs PUBLIC esmf stochastic_physics)
 
 if(DATM)
   target_link_libraries(ufs PUBLIC datatm)
@@ -304,7 +275,7 @@ if(S2S)
                                 FRONT_CICE6=ice_comp_nuopc
                                 CMEPS
                                 FRONT_CMEPS=MED)
-  add_dependencies(ufs mom6 cice cmeps)
+  add_dependencies(ufs mom6 cice cmeps stochastic_physics)
   target_link_libraries(ufs PUBLIC mom6
                                    cice
                                    cmeps)
@@ -336,26 +307,14 @@ if(DATM)
 endif()
 target_link_libraries(ufs_model PRIVATE ufs
                                         esmf
-                                        NetCDF::NetCDF_Fortran
-                                        ${MKL_LIB})
+                                        NetCDF::NetCDF_Fortran)
 
 ###############################################################################
 ### Install
 ###############################################################################
-install(
-  TARGETS fms
-  EXPORT fms-config
-  LIBRARY DESTINATION lib
-  ARCHIVE DESTINATION lib
-  PUBLIC_HEADER DESTINATION include )
-
-install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod DESTINATION ${CMAKE_INSTALL_PREFIX})
-
-install(EXPORT fms-config
-  DESTINATION lib/cmake
-)
 install(
   TARGETS ufs
+
   EXPORT ufs-config
   LIBRARY DESTINATION lib
   ARCHIVE DESTINATION lib)

modulefiles/macosx.gnu/fv3

@@ -39,6 +39,6 @@ fi
 ##
 ## Intel MKL library
 ##
-export MKL_DIR=${MKL_DIR:-/opt/intel/compilers_and_libraries_2019.4.233/mac/mkl}
-export MKL_INC="-m64 -I${MKL_DIR}/include"
-export MKL_LIB="-L${MKL_DIR}/lib -Wl,-rpath,${MKL_DIR}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl"
+#export MKL_DIR=${MKL_DIR:-/opt/intel/compilers_and_libraries_2019.4.233/mac/mkl}
+#export MKL_INC="-m64 -I${MKL_DIR}/include"
+#export MKL_LIB="-L${MKL_DIR}/lib -Wl,-rpath,${MKL_DIR}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl"

modulefiles/macosx.gnu/fv3_debug

@@ -39,6 +39,6 @@ fi
 ##
 ## Intel MKL library
 ##
-export MKL_DIR=${MKL_DIR:-/opt/intel/compilers_and_libraries_2019.4.233/mac/mkl}
-export MKL_INC="-m64 -I${MKL_DIR}/include"
-export MKL_LIB="-L${MKL_DIR}/lib -Wl,-rpath,${MKL_DIR}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl"
+#export MKL_DIR=${MKL_DIR:-/opt/intel/compilers_and_libraries_2019.4.233/mac/mkl}
+#export MKL_INC="-m64 -I${MKL_DIR}/include"
+#export MKL_LIB="-L${MKL_DIR}/lib -Wl,-rpath,${MKL_DIR}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl"