Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Implemented automation for oncoanalyser wgts existing both #623

Merged
merged 2 commits into from
Oct 9, 2023
Merged

Implemented automation for oncoanalyser wgts existing both #623

merged 2 commits into from
Oct 9, 2023

Conversation

victorskl
Copy link
Member

  • Added oncoanalyser_wgts_existing_both_step module hook to orchestrator
  • Improved look up for oncoanalyser WGS and WTS output dir
  • Added service layer method for S3Object REGEX query
  • Improved related unit tests

co-co: @reisingerf

reisingerf and others added 2 commits October 9, 2023 11:04
@reisingerf @victorskl
Draft oncoanalyser_wgts automation
28de4a3
@victorskl
Improved oncoanalyser_wgts_existing_both impl
550543a 
* Added oncoanalyser_wgts_existing_both_step module hook to orchestrator
* Improved look up for oncoanalyser WGS and WTS output dir
* Added service layer method for S3Object REGEX query
* Improved related unit tests
@victorskl victorskl added the feature New feature label Oct 9, 2023
@victorskl victorskl added this to the Release 2.2 milestone Oct 9, 2023
@victorskl
Copy link
Member Author

@scwatts Just FYI, for Portal automation, we will use wgts_existing_both.

@victorskl
Copy link
Member Author

Portal Release - Ocicat: Implement Portal automation integration for oncoanalyser

@victorskl victorskl merged commit 8854bda into dev Oct 9, 2023
1 check passed
@victorskl victorskl deleted the automate_oncoanalyser_wgts branch October 9, 2023 07:54
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@reisingerf reisingerf reisingerf approved these changes

Assignees

@victorskl victorskl

@reisingerf reisingerf

Labels
feature New feature
Projects
None yet
Milestone
Release 2.2
Development

Successfully merging this pull request may close these issues.
2 participants
@victorskl @reisingerf