Improved Pipeline Automation documentation #657
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* Pull up high level Q/A notes on what automation do with topup and rerun library, PTC/NTC samples, Lab Metadata new sheet procedure, ctTSO run dir dependency caveat.
victorskl
commented
Jan 11, 2024
| - DRAGEN transcriptome workflow is triggered in Subject-wide manner. | ||
| - i.e. It could go across different sequencing runs to find matching WTS library (e.g. topup) of a given subject. | ||
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@skanwal Trascriptome trigger behaviour has changed, significantly with Ocicat. So, added notes here. This is from yesterday discussion. fyi
| - Topup (library having `_topup`) are merged with previous libraries of the same name | ||
| - No logic yet for reruns (i.e. it will skip library having `_rerun` suffix) | ||
| - https://github.com/umccr/data-portal-apis/pull/262 | ||
| - https://github.com/umccr/data-portal-apis/pull/596 |
| 4. Deploy SubjectID generator App script | ||
| 5. Update SampleSheet Checker UI (if any) | ||
| - https://github.com/umccr/samplesheet-check-frontend/pull/40 | ||
| - https://umccr.slack.com/archives/C94CQMNVA/p1704844116202929 |
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@williamputraintan Added sschecker here too. And future of Metadata Manager; keep an eye on below trello card too; we shall drive from there. fyi
| - For ctTSO, | ||
| - We explicitly allow process NTC (https://github.com/umccr/data-portal-apis/issues/561) | ||
| - PTC are getting processed | ||
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@mhlunimelb hey Helen - documented ^^ it now. :) fyi
reisingerf
approved these changes
Jan 16, 2024
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Merging... |
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topup and rerun library, PTC/NTC samples, Lab Metadata
new sheet procedure, ctTSO run dir dependency caveat.