Merge pull request #292 from umccr/hide-onco-buttons

Disabled temporarily oncoanalyser from Launch Pad UI
umccr · Oct 27, 2023 · 070c2c6 · 070c2c6
2 parents 64e2d33 + 650382b
commit 070c2c6
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Showing 4 changed files with 35 additions and 9 deletions.
diff --git a/src/containers/subjects-launch/SubjectGPLLaunch/index.tsx b/src/containers/subjects-launch/SubjectGPLLaunch/index.tsx
@@ -47,7 +47,7 @@ function SubjectGPLLaunch({ subjectId }: Props) {
           className='p-button-rounded p-button-danger bg-red-500 cursor-auto'
           aria-label='Cancel'
         />
-        <div className='mt-3'>{`Something went wrong on launching RNAsum!`}</div>
+        <div className='mt-3'>{`Something went wrong on launching GPL!`}</div>
         <pre className='mt-3 p-3 text-left overflow-auto surface-200 '>
           {JSON.stringify(gplTrigger.error, Object.getOwnPropertyNames(gplTrigger.error), 2)}
         </pre>

diff --git a/src/containers/subjects-launch/SubjectOncoanalyserLaunch/index.tsx b/src/containers/subjects-launch/SubjectOncoanalyserLaunch/index.tsx
@@ -11,6 +11,7 @@ import WGSDragenInput, { WGSInput } from './inputModes/WGSDragenInput';
 import WTSStarAlignInput, { WTSInput } from './inputModes/WTSStarAlignInput';
 import ConfirmationDialog from '../utils/ConfirmationDialog';
 import { Button } from 'primereact/button';
+import { Message } from 'primereact/message';
 
 export enum OncoanalyserEnum {
   WGS = 'wgs',
@@ -91,6 +92,17 @@ export default function SubjectLaunchOncoanalyser({ subjectId }: Props) {
 
   return (
     <div>
+      {/* TODO https://trello.com/c/W0EjvUg6/1561-implement-oncoanalyser-trigger-in-portal-launch-pad */}
+      <Message
+        severity='warn'
+        text='Warning Message: THIS IS EXPERIMENTAL FEATURE. PLEASE DO NOT ATTEMPT UNLESS OTHERWISE ADIVCE.'
+        className='border-primary w-full justify-content-start'
+        style={{
+          border: 'solid #696cff',
+          borderWidth: '0 0 0 6px',
+          color: '#696cff',
+        }}
+      />
       <div className='text-2xl font-medium mb-4'>{subjectId} - Oncoanalyser</div>
       <OncoanalyserDescription subjectId={subjectId} />
       <SubjectMetadataTable subjectId={subjectId} />

diff --git a/src/containers/subjects-launch/SubjectWTSStarAlignment/index.tsx b/src/containers/subjects-launch/SubjectWTSStarAlignment/index.tsx
@@ -12,6 +12,7 @@ import { FastqRow, usePortalFastqAPI } from '../../../api/fastq';
 import JSONToTable from '../../../components/JSONToTable';
 import ConfirmationDialog from '../utils/ConfirmationDialog';
 import SubjectMetadataTable from '../SubjectMetadata';
+import { Message } from 'primereact/message';
 
 type Props = { subjectId: string };
 export default function SubjectLaunchWTSStarAlignment({ subjectId }: Props) {
@@ -116,6 +117,17 @@ export default function SubjectLaunchWTSStarAlignment({ subjectId }: Props) {
 
   return (
     <div>
+      {/* TODO https://trello.com/c/W0EjvUg6/1561-implement-oncoanalyser-trigger-in-portal-launch-pad */}
+      <Message
+        severity='warn'
+        text='Warning Message: THIS IS EXPERIMENTAL FEATURE. PLEASE DO NOT ATTEMPT UNLESS OTHERWISE ADIVCE.'
+        className='border-primary w-full justify-content-start'
+        style={{
+          border: 'solid #696cff',
+          borderWidth: '0 0 0 6px',
+          color: '#696cff',
+        }}
+      />
       <div className='text-2xl font-medium mb-4'>
         {subjectId} - Whole Transcriptome Sequencing Star Alignment Launch
       </div>

diff --git a/src/pages/subjects/SubjectLaunchPad/index.tsx b/src/pages/subjects/SubjectLaunchPad/index.tsx
@@ -7,8 +7,8 @@ import { Button } from 'primereact/button';
 import SubjectGPLLaunch from '../../../containers/subjects-launch/SubjectGPLLaunch';
 import SubjectRNAsumLaunch from '../../../containers/subjects-launch/SubjectRNAsumLaunch';
 import SubjectWGSTNLaunch from '../../../containers/subjects-launch/SubjectWGSTNLaunch';
-import SubjectLaunchStarAlign from '../../../containers/subjects-launch/SubjectWTSStarAlignment';
-import SubjectLaunchOncoanalyser from '../../../containers/subjects-launch/SubjectOncoanalyserLaunch';
+// import SubjectLaunchStarAlign from '../../../containers/subjects-launch/SubjectWTSStarAlignment';
+// import SubjectLaunchOncoanalyser from '../../../containers/subjects-launch/SubjectOncoanalyserLaunch';
 
 export enum launchPadOptions {
   NONE = '',
@@ -29,8 +29,10 @@ export default function SubjectLaunchPad() {
     { key: launchPadOptions.GPL, label: 'GRIDSS PURPLE LINX (GPL)' },
     { key: launchPadOptions.RNASUM, label: 'RNAsum' },
     { key: launchPadOptions.WGS_TN, label: 'Whole-Genome Sequencing Tumor-Normal (WGS T/N)' },
-    { key: launchPadOptions.STAR_ALIGN, label: 'Whole Transcriptome Sequencing Star Alignment' },
-    { key: launchPadOptions.ONCOANALYSER, label: 'Oncoanalyser' },
+    // TODO de-scope from Ocicat release and let temporary hide them for now
+    //  https://trello.com/c/W0EjvUg6/1561-implement-oncoanalyser-trigger-in-portal-launch-pad
+    // { key: launchPadOptions.STAR_ALIGN, label: 'Whole Transcriptome Sequencing Star Alignment' },
+    // { key: launchPadOptions.ONCOANALYSER, label: 'Oncoanalyser' },
   ];
   const location = useLocation();
   const navigate = useNavigate();
@@ -49,11 +51,11 @@ export default function SubjectLaunchPad() {
               <SubjectRNAsumLaunch subjectId={subjectId} />
             ) : lastPath == launchPadOptions.WGS_TN ? (
               <SubjectWGSTNLaunch subjectId={subjectId} />
-            ) : lastPath == launchPadOptions.STAR_ALIGN ? (
-              <SubjectLaunchStarAlign subjectId={subjectId} />
-            ) : lastPath == launchPadOptions.ONCOANALYSER ? (
-              <SubjectLaunchOncoanalyser subjectId={subjectId} />
             ) : (
+              // ) : lastPath == launchPadOptions.STAR_ALIGN ? (
+              //   <SubjectLaunchStarAlign subjectId={subjectId} />
+              // ) : lastPath == launchPadOptions.ONCOANALYSER ? (
+              //   <SubjectLaunchOncoanalyser subjectId={subjectId} />
               <div className='h-full'>
                 <div className='text-2xl font-medium mb-4'>{subjectId} - Report trigger</div>