Clear experiments redo #156
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* residues in ss msg more accurate * get ids uniprot test broke * ensure that rgy figs aren't overwriting each other * removing stale experiment nbs * agent can choose 'first' 'last' or 'all' frames for dssp * adjusting rgy to take traj & wrote missing rgy unit tests * memory defaults to false
* removed legacy simulation code * upgraded langchain, added and sync llms in tools * fixed uniprot get_ids test * add claude to models * fixed a bug in get_pdb returns * pinned langchain anthropic version * added separate flags for verbose and streaming * tidied up system prompt --------- Co-authored-by: Sam Cox <swrig30@ur.rochester.edu>
SamCox822
requested review from
qcampbel and
Jgmedina95
and removed request for
qcampbel
qcampbel
approved these changes
Aug 9, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
just clearing experiment outputs so that we can redo them -> old ones are saved elsewhere
note: the actual prompts in each notebook will need to still be updated as we run it to new versions.
this is just so we aren't mixing new/old