* residues in ss msg more accurate

* get ids uniprot test broke

* ensure that rgy figs aren't overwriting each other

* removing stale experiment nbs

* agent can choose 'first' 'last' or 'all' frames for dssp 

* adjusting rgy to take traj & wrote missing rgy unit tests

* memory defaults to false

* removed legacy simulation code

* upgraded langchain, added and sync llms in tools

* fixed uniprot get_ids test

* add claude to models

* fixed a bug in get_pdb returns

* pinned langchain anthropic version

* added separate flags for verbose and streaming

* tidied up system prompt

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Co-authored-by: Sam Cox <swrig30@ur.rochester.edu>