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@vincentvanhees vincentvanhees released this 08 Nov 16:56
· 111 commits to master since this release

(this is a GitHub only release, there will be no matching release on CRAN)

  • Part 6:

    • Add DFA functionality #839 (credits: Ian Meneghel Danilevicz and Victor Barreto Mesquita)

    • Add fragmentation metrics, same function as in part 5 but now applied at recording level #839

    • Circadian rhythm analysis now ignore invalid nights controlled with new parameter "includecrit.part6".

    • Circadian rhythm analysis now provides consistent results for both regardless of whether time series are stored with or without valid windows with parameter save_ms5raw_without_invalid.

  • Part 2 + 6: Revised and simplified IV and IS calculation which now ignores invalid timestamps and also comes with phi statistic (credits: Ian Meneghel Danilevicz). In part 2 we used to have 2 calculation, which is now replaced by just one and applied to all valid data points in the recordings. In part 6 this is repeated by for the time window as specified with parameter part6Window. Further, IVIS now uses argument threshold.lig as threshold to distinguish inactivity from active.

  • Part 2: Increase sensitivity clipping detection from 80% to 30% of a window. If the long epoch has more than 30% of its values close to the dynamic range of the sensor then it will be labelled as clipping.

  • Part 4: Now also has copy of part 5 variable ACC_spt_mg.

  • Part 5:

    • Moving LXMX from part 5 to part 6 as these are circadian rhythm analysis.

    • Omitted fragmentation metrics for spt window as not meaningful given that part 5 only focusses on valid daytime behaviours.

    • includenightcrit.part5 added to allow for controlling inclusion of windows in part 5 based on their amount of valid data during spt window. Default remains the same.

    • Fix incorrect usage of part 5 inclusion criteria testing, which used fraction as percentage.