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1. Pipelines-Wrappers Pipelines-Wrappers Public

   Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.

   Shell 13 11

2. RSeqPlots RSeqPlots Public

   R scripts for NGS data visualization

   R 12 6

3. PySeq PySeq Public

   Python scripts for downstream analysis of sequencing data

   Python 4 2

4. GWASanalytics GWASanalytics Public

   Shell 1

5. lncRNA lncRNA Public

   De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk

   Shell 10 4