Back to pull request #209

Open the VCF file manually when running sample check as pysam fails sometime #982

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Run time

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Job	Run time
build (3.8, 21.10.5, 11)	4m 2s
build (3.8, 22.10.7, 11)	4m 2s
build (3.9, 21.10.5, 11)	3m 48s
build (3.9, 22.10.7, 11)	3m 53s
	15m 45s