Update sylph to 0.7.0

[BiocondaBot]

Update sylph: 0.6.1 → 0.7.0

Info	Link or Description
Recipe	recipes/sylph (click to view/edit other files)
Summary	sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.
Home	https://github.com/bluenote-1577/sylph
Releases	https://github.com/bluenote-1577/sylph/tags
Recipe Maintainer(s)	@bluenote-1577
Author	@bluenote-1577

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

This pull request introduces updates to the meta.yaml file for the sylph package, including an increment of the version from "0.6.1" to "0.7.0" and a corresponding update to the SHA256 checksum for the source tarball, changing it from 9f384ecf33d5eed57e518c1cc238ffb5ac68948dcf921731ba77ccbd02b57bdb to 8d0dd0c4b64de9b4c7402f6a44a019b2f54aae0626308a6b8831b3239640b609. The build requirements have been modified from rust >=1.61 to {{ compiler("rust") }}. Additionally, new fields have been added under the about section, specifying license_family: MIT and dev_url: https://github.com/bluenote-1577/sylph. The build.sh file has been updated to remove comments and environment variable exports related to SSH-based Git connections for Rust/cargo, focusing solely on building a statically linked binary with Rust using the cargo install command.

Possibly related PRs

• Update pyopal to 0.7.0 #51907: The changes in this PR involve updating the meta.yaml file for the pyopal package, specifically incrementing the version from 0.6.1 to 0.7.0, which is directly related to the version update in the main PR for the sylph package.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between a3e778c and e8c2e98.

📒 Files selected for processing (2)

• recipes/sylph/build.sh (0 hunks)
• recipes/sylph/meta.yaml (3 hunks)

💤 Files with no reviewable changes (1)

• recipes/sylph/build.sh

🧰 Additional context used

🪛 yamllint

recipes/sylph/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (5)

recipes/sylph/meta.yaml (5)

1-1: LGTM: Version update to 0.7.0

The version update matches the PR objective and is correctly implemented.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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19-19: LGTM: Updated Rust compiler requirement

The change to use the conda-forge rust compiler directive ({{ compiler("rust") }}) is a good practice as it provides better compiler management and compatibility across different platforms.

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30-33: LGTM: Enhanced package metadata

Good additions to the package metadata:

• License family specification provides clearer licensing information
• Development URL helps users find the source repository

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Line range hint 1-38: Verify upstream release

Let's verify that the upstream release exists and the version bump follows Bioconda guidelines.

✅ Verification successful

Upstream release v0.7.0 verified successfully

The upstream release v0.7.0 exists and was published on 2024-11-06 with proper release notes and changelog. The version bump follows Bioconda guidelines as:

• Release is properly tagged
• Not a pre-release or draft
• Contains meaningful changelog
• No patches or additional files need updating

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the upstream release exists and follows Bioconda guidelines
# Expected: v0.7.0 tag should exist in the upstream repository

# Check if the release tag exists
gh release view v0.7.0 --repo bluenote-1577/sylph

# Check if there are any bioconda-specific files that need updating
fd -g "*.patch" -g "*.diff" -g "*.txt"

Length of output: 653

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14-14: Verify SHA256 checksum

Let's verify that the SHA256 checksum matches the source tarball from the upstream repository.

---

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[bluenote-1577]

@mencian I'm good with the changes. Let me know if there's anything you need me to do. Thanks!