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Add samtools for file format testing. #5050

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Add samtools for file format testing.

Add samtools for file format testing. #5050

Triggered via pull request February 10, 2025 20:54
@cmnbroadcmnbroad
synchronize #9093
cn_add_samtools
Status Failure
Total duration 50m 24s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
12m 5s
build and push gatk docker to artifacts
Validate script WDLs using womtools
42s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 0s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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8 errors
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker unit
Process completed with exit code 1.
Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size
gatkDockerImage
2.2 GB
test-results-17.0.6+10-cloud
82.2 KB
test-results-17.0.6+10-integration
575 KB
test-results-17.0.6+10-unit
5.06 MB
test-results-docker-17.0.6+10-conda
53.1 KB
test-results-docker-17.0.6+10-integration
577 KB
test-results-docker-17.0.6+10-unit
4.92 MB
test-results-docker-17.0.6+10-variantcalling
31.9 KB