Add a CI test with non-adjacent genomic intervals

broadinstitute · Jun 4, 2018 · 59d2725 · 59d2725
1 parent b3133dd
commit 59d2725
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/.../java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java b/.../java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java
@@ -80,6 +80,11 @@ public final class GenomicsDBImportIntegrationTest extends CommandLineProgramTes
             new SimpleInterval("chr20", 17970000, 17980000),
             new SimpleInterval("chr20", 17980001, 17981445)
     ));
+    private static final ArrayList<SimpleInterval> MULTIPLE_NON_ADJACENT_INTERVALS_THAT_WORK_WITH_COMBINE_GVCFS =
+        new ArrayList<SimpleInterval>(Arrays.asList(
+            new SimpleInterval("chr20", 17960187, 17969999),
+            new SimpleInterval("chr20", 17980001, 17981445)
+    ));
     private static final ArrayList<SimpleInterval> INTERVAL_3736 =
             new ArrayList<SimpleInterval>(Arrays.asList(new SimpleInterval("chr6",130365070,146544250)));
     private static final ArrayList<SimpleInterval> INTERVAL_NONDIPLOID =
@@ -126,6 +131,12 @@ public void testGenomicsDBImportFileInputsAgainstCombineGVCFWithMultipleInterval
         testGenomicsDBAgainstCombineGVCFs(LOCAL_GVCFS, MULTIPLE_INTERVALS_THAT_WORK_WITH_COMBINE_GVCFS, b38_reference_20_21, new String[0]);
     }
 
+    @Test
+    public void testGenomicsDBImportFileInputsAgainstCombineGVCFWithMultipleNonAdjacentIntervals() throws IOException {
+        testGenomicsDBAgainstCombineGVCFs(LOCAL_GVCFS, MULTIPLE_NON_ADJACENT_INTERVALS_THAT_WORK_WITH_COMBINE_GVCFS,
+            b38_reference_20_21, new String[0]);
+    }
+
     @Test
     public void testGenomicsDBImportFileInputsAgainstCombineGVCFWithNonDiploidData() throws IOException {
         testGenomicsDBAgainstCombineGVCFs(Arrays.asList(NA12878_HG37, MULTIPLOID_DATA_HG37), INTERVAL_NONDIPLOID, b37_reference_20_21, new String[0]);