fix possibility of a negative fragment length that shouldn't have hap…

…pened (#3463)
broadinstitute · Aug 18, 2017 · ad8a78b · ad8a78b
1 parent a1292ee
commit ad8a78b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ReadMetadata.java b/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ReadMetadata.java
@@ -364,7 +364,7 @@ public void addRead( final int readLength, final int templateLength, final boole
             nReads += 1;
             nBases += readLength;
             if ( isTemplateLengthTestable ) {
-                fragmentSizes.addObservation(templateLength);
+                fragmentSizes.addObservation(Math.abs(templateLength));
             }
         }