cronjob for counting git contributions and filing a PR with results #14
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| name: cronjob for counting git contributions and filing a PR with results | |
| # Run every Monday at 8:00 UTC | |
| # On Monday, we count git contributions | |
| # But we can also manually trigger this | |
| on: | |
| schedule: | |
| - cron: "0 14 * * MON" | |
| workflow_dispatch: | |
| permissions: | |
| pull-requests: write | |
| jobs: | |
| file-count-contributions-pr: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rocker/tidyverse:4.4 | |
| # We want to count the contributions to the dev branch | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: "dev" | |
| fetch-depth: 0 | |
| - name: Configure git | |
| run: | | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git config --local user.email "actions@github.com" | |
| git config --local user.name "GitHub Actions" | |
| # We need this package for one of the notebooks run via the shell script below | |
| - name: Install yaml R package | |
| run: Rscript -e "install.packages('yaml')" | |
| # Rerun the module we want new results for | |
| - name: Rerun count-contributions module | |
| run: | | |
| bash analyses/count-contributions/run-count-contributions.sh | |
| # Upload the manuscript YAML as an artifact | |
| - name: Upload metadata YAML artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: manuscript_metadata | |
| path: analyses/count-contributions/results/metadata.yaml | |
| # Upload the author information as an artifact | |
| - name: Upload author information TSV artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: author_information | |
| path: analyses/count-contributions/author_information.tsv | |
| # Create a pull request with the updated results | |
| - name: Create PR with updated contribution module | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| token: ${{ secrets.GH_TOKEN }} | |
| commit-message: Rerun count-contributions analysis module | |
| signoff: false | |
| branch: auto_count_contributions | |
| delete-branch: true | |
| title: 'GHA: Updated git contribution stats' | |
| body: | | |
| ### Description | |
| This PR auto-generated from GitHub Actions rerunning `analyses/count-contributions` | |
| ### Instruction for reviewers | |
| Review the updates in `analyses/count-contributions/results/` for accuracy | |
| reviewers: $GITHUB_ACTOR | |
| file-metadata-yaml-pr: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| needs: file-count-contributions-pr | |
| # We want to add the updated metadata to the manuscript repo | |
| steps: | |
| - name: Checkout manuscript repository | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: d3b-center/OpenPedCan-manuscript | |
| - name: Configure git | |
| run: | | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git config --local user.email "actions@github.com" | |
| git config --local user.name "GitHub Actions" | |
| # Set up directories to be able to receive artifacts | |
| # Note, You can not overwrite an existing file with an artifact, | |
| # so this step also removes existing files. | |
| - name: Directory setup | |
| run: | | |
| mkdir -p submission_info/ | |
| rm -f submission_info/author_information.tsv | |
| rm content/metadata.yaml | |
| - name: Download the metadata artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: manuscript_metadata | |
| path: content | |
| - name: Download the author information artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: author_information | |
| path: submission_info | |
| # Create a pull request with the updated results | |
| - name: Create PR with updated manuscript metadata YAML | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| token: ${{ secrets.GH_TOKEN }} | |
| commit-message: Update manuscript metadata | |
| signoff: false | |
| branch: auto_author_order | |
| delete-branch: true | |
| title: 'GHA: Updated author order' | |
| body: | | |
| ### Description | |
| This PR auto-generated from GitHub Actions workflow that counts git contributions and sets author order accordingly in the `AlexsLemonade/OpenPBTA-analysis` repo. | |
| See [the relevant module](https://github.com/d3b-center/OpenPedCan-analysis/tree/dev/analyses/count-contributions) for more info. | |
| ### Instruction for reviewers | |
| Review the updates in `content/metadata.yaml` and `submission_info/author_information.tsv` for accuracy. | |
| reviewers: $GITHUB_ACTOR |