Exclude descriptions from MTP disease mapping

[ewafula]

Purpose/implementation Section

What scientific question is your analysis addressing?

What was your approach?

• excluded disease description in mtp-diseases-mapping.tsv.
• some are formatted over several lines
• some are several paragraphs longs
• Only retaining id, name, and dbXRefs columns because at no time is the disease description going to be utilized

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Check to make sure the disease mapping file is formatted correctly

Is there anything that you want to discuss further?

NA

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Yes

Results

What types of results are included (e.g., table, figure)?

Tables

What is your summary of the results?

• mtp-diseases-mapping.tsv.gz
• mtp-targets-mapping.tsv.gz

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• This analysis has been added to continuous integration.

Documentation Checklist

• This analysis module has a README and it is up to date.
• This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• The analytical code is documented and contains comments.

[sangeetashukla]

@ewafula I reviewed the changes, and verified the results format in the file.
input_dir <- "results" mtp_disease <- read_tsv(file.path(input_dir,"mtp-diseases-mapping.tsv.gz")) ID_type <- strsplit(mtp_disease$id,"_") %>% lapply(., [[, 1) %>% unlist() %>% unique()

`

ID_type
[1] "DOID" "EFO" "HP" "MONDO" "Orphanet" "GO" "OBA" "OTAR" "OBI" "OGMS" "NCIT" "MP"

`

This makes sense now. Approving.

[ewafula]

@sangeetashukla, thank you for reviewing!

[zzgeng]

Look good to me! Approving!

[ewafula]

Look good to me! Approving!

@zzgeng, thank you for reviewing!