Update Dockerfile #36
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Install mygene for querying gene IDs and symbols from mygene.info. mygene.info seems to be actively maintained. The query results are more comprehensive than [biomaRt](https://bioconductor.org/packages/release/bioc/html/biomaRt.html). Relevant URL: - http://mygene.info/about - https://bioconductor.org/packages/release/bioc/html/mygene.html
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@kgaonkar6 Thank you for reviewing! Can you merge this PR? I am not authorized to merge. |
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Purpose/implementation Section
What scientific question is your analysis addressing?
Install mygene for querying gene IDs and symbols from mygene.info.
mygene.info seems to be actively maintained. The query results are more comprehensive than biomaRt.
Relevant URLs:
mygene.info is suggested by @taylordm and @jharenza.
What was your approach?
Update Dockerfile by adding
What GitHub issue does your pull request address?
In d3b-center/ticket-tracker-OPC#64, additional gene full names and RefSeq Protein IDs are required to be added to the MAF table.
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Dockerfile updates.
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Yes.
Results
What types of results are included (e.g., table, figure)?
NA
What is your summary of the results?
NA
Reproducibility Checklist