Refactoring molecular-subtyping-EPN module

[zzgeng]

Purpose/implementation Section

What scientific question is your analysis addressing?

Update molecular-subtyping-EPN module to include a script to generate JSON file for sample selection.

What was your approach?

Add script to generate json file, which includes exact_path_dx and path_free_text_exact for CRANIO sample subsetting.

What GitHub issue does your pull request address?

d3b-center/ticket-tracker-OPC#543

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

00-EPN-select-pathology-dx.R
epn-subset/EPN_subtyping_path_dx_strings.json

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Yes

Results

What types of results are included (e.g., table, figure)?

JSON

What is your summary of the results?

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• This analysis has been added to continuous integration.

Documentation Checklist

• This analysis module has a README and it is up to date.
• This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• The analytical code is documented and contains comments.

[atlas4213]

The code logic looks good and the module compiled successfully.

[jharenza]

I made some suggestions