(3-B/N) GISTIC v13 #510
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(3-B/N) GISTIC v13 #510
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(21/21) Subset v13
(20/N) Independent specimens v13
(19/N) Integrate/histology v13
(18/N) Pathology v13
(17/N) NBL v13
(16/N) LGG v13
(15/N) HGG v13
(14/N) Pineoblastoma v13
(13/N) ATRT v13
(12/N) Neurocytoma v13
(11/N) EWS v13
(10/N) Chordoma v13
(9/N) Embryonal v13
(8/N) EPN v13
(6-7/N) MB and CRANIO v13
(5/N) TP53 v13
(4-D/N) GSVA v13
(4-C/N) TMB v13
(4-B/N) update and run fusion summary
(4-A/N) Focal CN v13
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Purpose/implementation Section
What scientific question is your analysis addressing?
This PR runs GISTIC v13 and also updates the analysis module script to point to
run-gistic-module.shwhich contains the R script previously in the analysis module script, and points to therun-gistic-opentargets.shscript.What was your approach?
What GitHub issue does your pull request address?
Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.
Which areas should receive a particularly close look?
Is there anything that you want to discuss further?
Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?
Results
What types of results are included (e.g., table, figure)?
What is your summary of the results?
Reproducibility Checklist
Documentation Checklist
READMEand it is up to date.analyses/README.mdand the entry is up to date.