Run mutational signatures on v13

[zzgeng]

Purpose/implementation Section

What scientific question is your analysis addressing?

Rerun mutational signature module.

What was your approach?

What GitHub issue does your pull request address?

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• This analysis has been added to continuous integration.

Documentation Checklist

• This analysis module has a README and it is up to date.
• This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• The analytical code is documented and contains comments.

[jharenza]

It looks like these results are blank and thus plots are wonky. In addition, the plot for script 04 did not print, likely because of the empty files.... Can you investigate?

[jharenza]

@zzgeng I am ok if you write a shell ifelse to skip 04 script for CI - that was very project specific for the OpenPBTA paper anyway ... however, can you also add the tumor only sample maf here? thanks!

[rjcorb]

Checked these results against v12 mut sigs and see excellent concordance (average inter-version correlation = 1 across all samples). Approving!