Monthly Docker Build Validation

Monthly Docker Build Validation #19

Triggered via schedule September 1, 2024 01:28

dmiller15

⁠ da6f60a

master

Status Failure

Total duration 6h 3m 10s

Artifacts –

monthly_build_check_dockers.yml

on: schedule

Get Changed Dockerfiles Matrix

Matrix: build-dockerfiles

Annotations

35 errors and 189 warnings

Build annovar/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c yum install -y wget perl bzip2 gcc ncurses-devel zlib-devel bzip2-devel xz-devel openssl-devel libcurl-devel make;" did not complete successfully: exit code: 1

Build cellranger/6.1.2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y curl && curl -sL \"https://cf.10xgenomics.com/releases/cell-exp/cellranger-${CELLRANGER_MAJ_VER}.tar.gz?Expires=1687836169&Policy=eyJTdGF0ZW1lbnQiOlt7IlJlc291cmNlIjoiaHR0cHM6Ly9jZi4xMHhnZW5vbWljcy5jb20vcmVsZWFzZXMvY2VsbC1leHAvY2VsbHJhbmdlci02LjEuMi50YXIuZ3oiLCJDb25kaXRpb24iOnsiRGF0ZUxlc3NUaGFuIjp7IkFXUzpFcG9jaFRpbWUiOjE2ODc4MzYxNjl9fX1dfQ__&Signature=hP3Qa5KzkyzLID5E1xHUBUBRnhW5viNgzMiYDfLUHaXAL3rwgrD5x8Ix7lbwvcUe9NLLV92be9byFrvqlL5Mo4T7okxHNs41TsaPnWFzksmuBD4PlmBKexPmG~9x~9l3o1~JtOuZFj7ArbVOM1Mjr80wgoppa9qDeoMAgqhxrCQ9e2mRVaTEjVb03Op7uuCgUWHNgcfmPrfpQRyNUmLNHhsw0Nc2Vl6-c9UrYgVF~Q-bKUrJN7mKYsKQi8GN2NQCiqtjLxqd0KDZMGmdYSzthSX3Hmbg4xEwakCECg6qqDeQBfsHVqwDx7McPP755HNKJ9fRwWJsGsCHgcwADRY9Ng__&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA\" | tar -xz && apt remove -y curl" did not complete successfully: exit code: 2

Build freebayes/v1.3.2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y cmake=${CMAKE_VERSION} g++=${G_VERSION} git=${GIT_VERSION} liblzma-dev=${LIBLZMA_VERSION} libbz2-dev=${LIBBZ2_VERSION} wget=${WGET_VERSION} zlib1g-dev=${ZLIB1G_VERSION} && git clone --recursive --depth 1 --branch ${FREEBAYES_VERSION} https://github.com/ekg/freebayes.git && cd freebayes && make && make install" did not complete successfully: exit code: 100

Build annoFuse/0.90.0

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils" did not complete successfully: exit code: 100

Build kf_vcf2maf/v1.0.0

buildx failed with: ERROR: failed to solve: process "/bin/sh -c swupd os-install --no-progress --no-boot-update --no-scripts --version ${CLEAR_VERSION} --path /install_root --statedir /swupd-state --bundles os-core-update,which" did not complete successfully: exit code: 14

Build bwa-bundle/0.1.17

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get -y install oracle-java8-installer && apt-get clean" did not complete successfully: exit code: 100

Build BIC-seq2/0.7.2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update --fix-missing && apt install -y wget bzip2 ca-certificates curl tar libxt-dev r-base parallel samtools build-essential zlib1g-dev libncurses5-dev libbz2-dev liblzma-dev libcurl4-openssl-dev libcrypto++-dev libcurl4-openssl-dev libssl-dev && wget -q http://compbio.med.harvard.edu/BIC-seq/NBICseq-norm_v${NORM_VERSION}.tar.gz && wget -q http://compbio.med.harvard.edu/BIC-seq/NBICseq-seg_v${SEG_VERSION}.tar.gz && tar -xzf NBICseq-norm_v${NORM_VERSION}.tar.gz && rm NBICseq-norm_v${NORM_VERSION}.tar.gz && cd NBICseq-norm_v${NORM_VERSION} && make clean && make && cd / && tar -xzf NBICseq-seg_v${SEG_VERSION}.tar.gz && rm NBICseq-seg_v${SEG_VERSION}.tar.gz && cd NBICseq-seg_v${SEG_VERSION} && make clean && make && cd / && wget -q http://compbio.med.harvard.edu/BIC-seq/BICseq2/samtools-0.1.7a_getUnique-0.1.3.tar.gz && tar -xzf samtools-0.1.7a_getUnique-0.1.3.tar.gz && rm samtools-0.1.7a_getUnique-0.1.3.tar.gz && chown -R root:root NBICseq-norm_v${NORM_VERSION} && chown -R root:root NBICseq-seg_v${SEG_VERSION} && chown -R root:root samtools-0.1.7a_getUnique-0.1.3 && chmod -R 755 NBICseq-norm_v${NORM_VERSION} && chmod -R 755 NBICseq-seg_v${SEG_VERSION} && chmod -R 755 samtools-0.1.7a_getUnique-0.1.3 && apt remove -y wget" did not complete successfully: exit code: 2

Build arriba/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c export DEBIAN_FRONTEND=noninteractive && apt-get update -y && apt-get install -y samtools r-base rna-star wget libcurl4-openssl-dev libxml2-dev && Rscript -e 'install.packages(\"circlize\", repos=\"http://cran.r-project.org\"); source(\"https://bioconductor.org/biocLite.R\"); biocLite(c(\"GenomicRanges\", \"GenomicAlignments\"))'" did not complete successfully: exit code: 1

Build arriba/1.1.0

Build hotspots/0.1.0

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt upgrade -y && apt install -y wget python3-dev python3-pip && python3 -m pip install 'pysam>=${PYSAM_VERSION}' && wget https://raw.githubusercontent.com/kids-first/kf-somatic-workflow/9868648597ff4d878708689080c4ca0b0b4615c0/scripts/hotspot.py && chmod +x hotspot.py && apt remove -y wget" did not complete successfully: exit code: 1

Build arriba/1.0.1

Build lumpy-sv/0.2.13

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential git cmake curl python python-pip gawk autoconf libcurl4-openssl-dev libz-dev liblzma-dev libssl-dev bsdmainutils libncurses5-dev libbz2-dev && pip install pysam numpy==1.16.5 && curl -OL https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2 && tar -xjf samtools-1.8.tar.bz2 && rm samtools-1.8.tar.bz2 && cd /samtools-1.8 && ./configure && make && make install && cd / && git clone https://github.com/GregoryFaust/samblaster && cd samblaster && make && cp samblaster /usr/local/bin/. && cd / && rm -rf samblaster && curl -OL https://github.com/biod/sambamba/releases/download/v0.6.7/sambamba_v0.6.7_linux.tar.bz2 && tar -xjf sambamba_v0.6.7_linux.tar.bz2 && rm sambamba_v0.6.7_linux.tar.bz2 && mv ./sambamba /usr/local/bin/ && curl -OL https://github.com/arq5x/lumpy-sv/releases/download/${LUMPY_VERSION}/lumpy-sv-v${LUMPY_VERSION}.tar.gz && tar -xzf lumpy-sv-v${LUMPY_VERSION}.tar.gz && rm lumpy-sv-v${LUMPY_VERSION}.tar.gz && mv lumpy-sv-v${LUMPY_VERSION} lumpy-sv && cd lumpy-sv && make && mv /lumpyexpress_mod bin/lumpyexpress && chmod 755 bin/lumpyexpress && cp bin/* /usr/local/bin/. && apt remove -y curl && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

Build LinkedSV/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y wget build-essential git samtools bedtools python-pip zlib1g-dev && pip install sklearn scipy numpy psutil argparse pandas seaborn datetime && git clone https://github.com/WGLab/LinkedSV.git && cd LinkedSV/ && sh build.sh && cd / && apt remove -y wget git python-pip" did not complete successfully: exit code: 1

Build gatk/4.1.7.0R

buildx failed with: ERROR: failed to solve: process "/bin/sh -c R -e \"versions::install.versions(c('optparse','data.table'),c('${OPTPARSE_VERSION}','${DATATABLE_VERSION}'))\"" did not complete successfully: exit code: 1

Build controlfreec/11.5

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y wget build-essential zlib1g-dev libncurses5-dev libbz2-dev libxml2-dev liblzma-dev libcurl4-openssl-dev samtools bedtools r-base; chmod 755 get_config.pl && wget -q https://github.com/BoevaLab/FREEC/archive/v11.5.tar.gz && tar -xzf v11.5.tar.gz && cd FREEC-11.5/src && make && cd / && wget https://github.com/biod/sambamba/releases/download/v0.6.9/sambamba-0.6.9-linux-static.gz && gunzip -q sambamba-0.6.9-linux-static.gz && chmod 755 sambamba-0.6.9-linux-static && mv sambamba-0.6.9-linux-static /usr/local/bin/sambamba && Rscript -e 'install.packages(\"XML\")' && Rscript -e 'source(\"https://bioconductor.org/biocLite.R\")' && Rscript -e 'BiocInstaller::biocLite(c(\"rtracklayer\"))'" did not complete successfully: exit code: 1

Build gatk/4.2.0.0R

Build annotsv/3.1.1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c git clone --branch $SAMTOOLS_VERSION --recurse-submodules git://github.com/samtools/htslib.git && git clone --branch $SAMTOOLS_VERSION git://github.com/samtools/bcftools.git" did not complete successfully: exit code: 128

Build speedseq/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential apt-utils autoconf git cmake python curl libz-dev libtbb-dev libncurses5-dev bsdmainutils gawk libbz2-dev liblzma-dev libcurl4-openssl-dev libssl-dev && curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py && python get-pip.py && rm get-pip.py && pip install numpy pysam scipy && git clone --recursive https://github.com/hall-lab/speedseq && cd /speedseq && curl -OL https://root.cern.ch/download/root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && tar -xzf root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && rm root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && rm -rf src/samtools-1.3.1 && curl -OL https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2 && tar -xjf samtools-1.8.tar.bz2 && rm samtools-1.8.tar.bz2 && mv samtools-1.8 src/ && cat Makefile | sed 's/1.3.1/1.8/' > temp && mv temp Makefile && cat src/CNVnator/Makefile | sed 's/MathCore/MathCore -lcrypto -llzma -lbz2 -lcurl/' > temp && mv temp src/CNVnator/Makefile" did not complete successfully: exit code: 1

Build scdblfinder/1.8.0

buildx failed with: ERROR: failed to solve: process "/bin/sh -c R -e \"BiocManager::install('scDblFinder')\"" did not complete successfully: exit code: 1

Build sv2/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y python python-pip libz-dev bedtools tabix && pip install cython numpy pandas pybedtools pysam scikit-learn==0.19.1 scipy && pip install sv2 && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

Build vcf_utils

buildx failed with: ERROR: failed to solve: process "/bin/sh -c git clone https://github.com/atks/vt.git && cd vt && make -j8 && make test" did not complete successfully: exit code: 2

Build smoove/0.2.5

buildx failed with: ERROR: failed to solve: process "/bin/sh -c pip install pysam numpy==1.16.5" did not complete successfully: exit code: 1

Build SVTyper/0.7.1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential curl python python-pip libcurl4-openssl-dev libz-dev liblzma-dev libssl-dev libbz2-dev && pip install pysam numpy==1.16.5 && curl -OL https://github.com/hall-lab/svtyper/archive/v${SVTYPER_VERSION}.tar.gz && tar -xzf v${SVTYPER_VERSION}.tar.gz && rm v${SVTYPER_VERSION}.tar.gz && pip install svtyper-${SVTYPER_VERSION}/ && apt remove -y curl && apt clean -y" did not complete successfully: exit code: 1

Build sanger/caveman-pindel/latest

buildx failed with: ERROR: failed to solve: process "/bin/sh -c tar -xzf ${CAVEMAN_VERSION}.tar.gz && rm ${CAVEMAN_VERSION}.tar.gz && cd CaVEMan-${CAVEMAN_VERSION} && make && cd / && wget -q https://github.com/genome/pindel/archive/${PINDEL_COMMIT}.tar.gz && tar -xzf ${PINDEL_COMMIT}.tar.gz && rm ${PINDEL_COMMIT}.tar.gz && mv pindel-${PINDEL_COMMIT} pindel-${PINDEL_VERSION} && cd pindel-${PINDEL_VERSION} && ./INSTALL $LD_LIBRARY_PATH && cpanm --notest Bio::DB::HTS && cd / && wget -q https://github.com/cancerit/cgpVcf/archive/v${CGP_VCF_VERSION}.tar.gz && tar -xzf v${CGP_VCF_VERSION}.tar.gz && rm v${CGP_VCF_VERSION}.tar.gz && cd cgpVcf-${CGP_VCF_VERSION} && ./setup.sh /usr/local/bin/cgpVcf-${CGP_VCF_VERSION} && cd /" did not complete successfully: exit code: 1

Build VEP/r93

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update -y && apt upgrade -y && apt install -y build-essential git cpanminus curl wget unzip automake samtools tabix libmysqlclient-dev libncurses5-dev zlib1g-dev libgsl0-dev libexpat1-dev libgd-dev&& cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version && git clone https://github.com/Ensembl/ensembl-vep.git && cd ensembl-vep && git checkout release/${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd /ensembl-vep/cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && wget https://github.com/mskcc/vcf2maf/archive/v${MAF_VERSION}.tar.gz && tar -xzf v${MAF_VERSION}.tar.gz && rm v${MAF_VERSION}.tar.gz && mv vcf2maf-${MAF_VERSION} vcf2maf && apt remove curl wget git -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

Build VEP/r93_v2

Build VEP/r93.7

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update -y && apt upgrade -y && apt install -y build-essential git cpanminus curl wget unzip automake samtools tabix libmysqlclient-dev libncurses5-dev zlib1g-dev libgsl0-dev libexpat1-dev libgd-dev pigz&& cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version && wget -q https://github.com/Ensembl/ensembl-vep/archive/release/${VEP_VERSION}.tar.gz && tar -xzf ${VEP_VERSION}.tar.gz && rm ${VEP_VERSION}.tar.gz && cd ensembl-vep-release-${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && apt remove curl wget -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

Build pypy/3

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install gfortran gfortran-10 libgfortran-10-dev libgfortran5 && apt install liblapack-dev libblas-dev libblas3 liblapack3 && pypy -m pip install numpy cython && git clone https://github.com/xianyi/OpenBLAS && cd OpenBLAS && make FC=gfortran && make PREFIX=/opt/OpenBLAS install && cd .. && pypy -m pip install scipy pandas pyreadr" did not complete successfully: exit code: 1

Build codex2/3.8

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update --fix-missing && apt install -y software-properties-common build-essential curl gfortran libcurl4-openssl-dev libxml2-dev zlib1g-dev libxmlsec1 libblas-dev liblapack-dev libssl-dev && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && apt update && apt install -y r-base-core=${R_VERSION} && Rscript -e 'if (!requireNamespace(\"BiocManager\", quietly = TRUE)) install.packages(\"BiocManager\"); BiocManager::install(\"CODEX\", version = \"3.8\"); BiocManager::install(\"WES.1KG.WUGSC\", version = \"3.8\"); install.packages(\"devtools\"); devtools::install_github(\"yuchaojiang/CODEX2/package\"); source(\"https://bioconductor.org/biocLite.R\"); biocLite(\"BSgenome.Hsapiens.UCSC.hg38\")'" did not complete successfully: exit code: 1

Build VEP/r94

buildx failed with: ERROR: failed to solve: process "/bin/sh -c git clone https://github.com/Ensembl/ensembl-vep.git && cd ensembl-vep && git checkout release/${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd /ensembl-vep/cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && wget https://github.com/mskcc/vcf2maf/archive/v${MAF_VERSION}.tar.gz && tar -xzf v${MAF_VERSION}.tar.gz && rm v${MAF_VERSION}.tar.gz && mv vcf2maf-${MAF_VERSION} vcf2maf && apt remove curl wget git -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 255

Build WGSA

buildx failed with: ERROR: failed to solve: process "/bin/sh -c cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version" did not complete successfully: exit code: 1

Build toolkit_tmb/1.0.0

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get update -y && R -e \"BiocManager::install(version = \\\"${BIOC_VERSION}\\\")\" && R -e \"BiocManager::install('GenomicRanges', version = \\\"${BIOC_VERSION}\\\")\" && R -e \"remotes::install_version('optparse', version = \\\"${OPTPARSE_VERSION}\\\", dependencies=TRUE, repos='http://cran.us.r-project.org')\" && R -e \"remotes::install_github('d3b-center/d3b-analysis-toolkit', ref = 'main', subdir = 'tmb')\" && apt-get clean -y && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 1

Build star/fusion-1.10.1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c wget -q https://github.com/STAR-Fusion/STAR-Fusion/releases/download/STAR-Fusion-v${STAR_FUSION_VERSION}/STAR-Fusion.v${STAR_FUSION_VERSION}.tar.gz && tar -xzf STAR-Fusion.v${STAR_FUSION_VERSION}.tar.gz && rm STAR-Fusion.v${STAR_FUSION_VERSION}.tar.gz && mv STAR-Fusion.v${STAR_FUSION_VERSION} STAR-Fusion && cd STAR-Fusion && make && cd / && mv STAR-Fusion /usr/local/ && wget -q https://github.com/samtools/samtools/releases/download/${SAMTOOLS_VERSION}/samtools-${SAMTOOLS_VERSION}.tar.bz2 && tar -xjf samtools-${SAMTOOLS_VERSION}.tar.bz2 && cd /samtools-${SAMTOOLS_VERSION}/ && ./configure && make && make install && cd htslib-${HTSLIB_VERSION}/ && ./configure && make && mv htsfile libhts.so* tabix bgzip /usr/local/bin && rm -rf /samtools* && apt remove -y build-essential wget && apt -y autoclean && apt -y autoremove" did not complete successfully: exit code: 2

Build soupx_R/4.1.0_SoupX

The job running on runner GitHub Actions 49 has exceeded the maximum execution time of 360 minutes.

Build soupx_R/4.1.0_SoupX

The operation was canceled.

Get Changed Dockerfiles Matrix

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Build gatk/3.8

The following actions use a deprecated Node.js version and will be forced to run on node20: docker/setup-buildx-action@v2, docker/build-push-action@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Build annovar/latest

Build gatk/3.5-0-g36282e4

Build gatk/3.6-0-g89b7209

Build bvcftools

Build bwa/0.7.17-r1188

Build cellranger/6.1.2

Build freebayes/v1.3.2

Build bwa/latest

Build echtvar/0.1.9

Build gatk/4.beta.1

Build bwa-picard/broad

Build gatk/4.beta.5

Build bed_tools/bedopsv2.4.36_plus_bedtools

Build freebayes/v1.3.1

Build bwa-picard/latest

Build gatk/4.beta.1-3.5

Build bwa/0.7.15-r1140

Build annoFuse/0.90.0

Build cutadapt/latest

Build gatk/4.beta.6

Build gatk/4.0.1.2

Build cutadapt/3.4

Build gatk/4.beta.6-tabix

Build cutesv/2.0.3

Build echtvar/0.2.0

Build gatk/4.0.5.2

Build kf_vcf2maf/v1.0.0

Build gatk-picard/4.0.1.2-2.8.3

Build cutesv/1.0.13

Build bwa-bundle/0.1.17

Build intervar/v2.2.1

Build gatk/4.beta.5-tabix

Build BIC-seq2/0.7.2

Build bcbio/variation_recall-0.2.4

Build gatk-picard/4.beta.1-2.8.3

Build isoseq/v4.0.0

Build fastqc/v0.11.9

Build gatk/latest

Build hisat2/2.2.1

Build arriba/2.2.1

Build arriba/latest

Build canvas/1.11.0

Build arriba/1.1.0

Build lima/v2.9.0

Build autopvs1/v1.0.1

Build FusionAnnotator/0.1.1

Build gatk/4.1.1.0

Build hotspots/0.1.0

Build gatk/3.8_ubuntu

Build manta/1.4

Build manta/1.6.0

Build picard/2.15.0

Build picard/2.8.3

Build picard/2.14.0

Build picard/2.17.4

Build pbfusion/v0.4.1

Build arriba/1.0.1

Build loompy/2.0.16

Build FusionCatcher/latest

Build picard-r/picard2.15.0-r.3.3.3

Build minimap2/v2.28

Build lumpy-sv/0.2.13

Build LinkedSV/latest

Build picard-r/picard2.8.3-r3.3.3

Build picard/latest

Build cellranger/5.0

Build gatk/4.1.7.0R

Build python/2.7.13

Build controlfreec/11.5

Build pigeon/v1.2.0

Build cnvnator/v0.4.1

Build plink/1.90b7.2

Build gatk/4.0.1.0

Build cellranger/3.1

Build gatk/4.2.0.0R

Build cellranger/6.0

Build picard/2.18.9

Build samtools/1.20-parallel

Build sambamba/0.7.1

Build mend_qc

Build msisensor/1.1.a

Build sambamba/0.6.3

Build picard/2.18.9R

Build bcftools/1.20

Build samtools/1.6

Build seqkit/2.3.1

Build pizzly/latest

Build samtools/1.3.1

Build python/3.9-canine-util

Build sequenza/3.0.0

Build gatk/4.0.12.0

Build peddy/v0.4.2

Build seurat/latest

Build peddy/v0.4.7

Build samtools/latest

Build lancet/1.0.7

Build annotsv/3.1.1

Build sniffles/2.0.3

Build snpEff/4.3t

Build star/2.6.1d

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Failed to download action 'https://api.github.com/repos/docker/setup-buildx-action/tarball/885d1462b80bc1c1c7f0b00334ad271f09369c55'. Error: The request was canceled due to the configured HttpClient.Timeout of 100 seconds elapsing.

Build svaba/1.1.0

Back off 28.095 seconds before retry.

Build svaba/1.1.0