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Indigo ignores alternate name for templates in MOL v3000
Export to MOL
Bucket: Export to MOL related issues
Priority: High
Severity: High
High level visibility to the user
User`s Feedback
Image missing stereochemistry information when using abbreviations
Export to SVG/PNG
Bucket: Bugs related to SVG/PNG export
Priority: Medium
Severity: High
High level visibility to the user
Stereochemistry
Bucket: Stereochemistry related issues
User`s Feedback
#2741
opened Jan 24, 2025 by
jblack-mestre
V2000 Mol file loader skips essential SGroup line in certain cases
Export to MOL
Bucket: Export to MOL related issues
User`s Feedback
#2732
opened Jan 22, 2025 by
smz-bayer
Clean Up function doesn't work if query atom and monomer on the canvas at the same time
Layout
Priority: Medium
Severity: Medium
Medium level visibility to the user
The monomer appears expanded after loading file in RXN V2000 format
Export to RXN
Bucket: Export to RXN related issues
Priority: Medium
Severity: Medium
Medium level visibility to the user
Monomer could be saved to RDF V3000 format but can't be loaded back - exception
Export to RDF
Bucket: Export to RDF
Priority: Medium
Severity: Medium
Medium level visibility to the user
Reaction SMILES lossily handles enhanced stereochemistry
Export to SMARTS
Bucket: Bugs related to Export to SMARTS
Stereochemistry
Bucket: Stereochemistry related issues
User`s Feedback
#2720
opened Jan 2, 2025 by
dan2097
Mismatch in Oxygen Atom Mapping Between Reactants and Product in Indigo Automapping
User`s Feedback
#2719
opened Dec 31, 2024 by
RamziWeslati
Valid CXSMILES rejected
Export to Extended SMILES
Bucket: Bugs related to Export to Extended SMILES
Priority: Medium
Severity: High
High level visibility to the user
User`s Feedback
Support for the star atom (*)
Priority: High
Severity: High
High level visibility to the user
Test Cases Written
Test cases has been written for that issue
User`s Feedback
Unable to save query features in atoms to mol v2000, system throws exception
Export to MOL
Bucket: Export to MOL related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Medium
Query features
Bucket: Query features related issues
regress found by autotest
Severity: Medium
Medium level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Export to SMILES works wrong if loaded from MOL
Export to Extended SMILES
Bucket: Bugs related to Export to Extended SMILES
Export to MOL
Bucket: Export to MOL related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Medium
regress found by autotest
Severity: Medium
Medium level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Atom Query feature export: System lost MOST "Substitution count" values
Export to MOL
Bucket: Export to MOL related issues
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Low
Query features
Bucket: Query features related issues
Severity: Low
Low level visibility to the user
System can't load from MOL v2000, throws an error: Bucket: Export to MOL related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Medium
regress found by autotest
Severity: Medium
Medium level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Convert error! struct data not recognized as molecule, query, reaction or reaction query
Export to MOL
System implicitly export canvas to mol v3000 if loaded from mol v2000
Export to MOL
Bucket: Export to MOL related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Low
regress found by autotest
Severity: Low
Low level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
System losts one stereo label if load from MOL
Export to MOL
Bucket: Export to MOL related issues
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Medium
regress found by autotest
Severity: Medium
Medium level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Unable to save canvas to MOL - system throws an error: Bucket: Export to MOL related issues
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Low
regress found by autotest
Severity: Low
Low level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Given string could not be loaded as (query or plain) molecule or reaction, see the error messages: 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors', 'RXN loader: bad header {', 'RXN loader: bad header {', 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors'
Export to MOL
Data label coordinates got lost if loaded from MOL
Export to MOL
Bucket: Export to MOL related issues
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Low
regress found by autotest
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
R Group login condition is wrong if loaded from MOL
Export to MOL
Bucket: Export to MOL related issues
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Mol v2000 Loader Replacement
Issues related to replacement Ketcher mol loader with Indigo one
Priority: Low
regress found by autotest
Severity: Low
Low level visibility to the user
Test Automation affected
That issue affect on existed auto test, please update screenshots after fix
Ketcher sends different set of parameters to indigo in case of Copy/Paste and Layout operation
Micromolecules canvas
Bucket: Micromolecules canvas related issues
Priority: High
Severity: Medium
Medium level visibility to the user
Truncating sign "..." isn't presented when reaction's conditions are truncated because of the long name
Cascade reactions
MMPK
Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes
Priority: Low
Reaction's name and conditions aren't recognized on save to RDF for single/cascade reaction with simple arrows
Cascade reactions
MMPK
Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes
Priority: High
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ProTip!
Updated in the last three days: updated:>2025-01-28.