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Bump galaxy packages to 22.05 #1275

Merged
merged 13 commits into from
Feb 10, 2023
Merged

Bump galaxy packages to 22.05 #1275

merged 13 commits into from
Feb 10, 2023

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bernt-matthias
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@bernt-matthias bernt-matthias commented Oct 4, 2022 •
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At the moment this works .. because the 22.05 packages have not been release...

@nsoranzo nsoranzo marked this pull request as draft October 5, 2022 11:49
bernt-matthias
bernt-matthias commented Nov 28, 2022
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@bernt-matthias bernt-matthias marked this pull request as ready for review November 28, 2022 16:59
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I don't think it's time to merge this, we still don't have 22.5 packages, right?

@bernt-matthias bernt-matthias marked this pull request as draft November 29, 2022 09:02
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mvdbeek commented Dec 8, 2022

I pushed dev packages for util and tool_util (https://pypi.org/project/galaxy-util/22.5.0.dev0/, https://pypi.org/project/galaxy-tool-util/22.5.0.dev0/), if you want to try those.

nsoranzo
nsoranzo reviewed Dec 8, 2022
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nsoranzo commented Dec 8, 2022

I pushed dev packages for util and tool_util (https://pypi.org/project/galaxy-util/22.5.0.dev0/, https://pypi.org/project/galaxy-tool-util/22.5.0.dev0/), if you want to try those.

FYI I have an incoming PR to update some package requirements before we release the stable 22.5 ones.

@bernt-matthias @nsoranzo
Update planemo/galaxy/config.py
e58bc7d 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
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This one: galaxyproject/galaxy#15159?

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nsoranzo commented Dec 9, 2022

This one: galaxyproject/galaxy#15159?

Yes!

@bernt-matthias
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Ideally also galaxyproject/galaxy#14572 would be included :)

@bernt-matthias
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This galaxyproject/galaxy#15439 should fix a few of the failing tests

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mvdbeek commented Jan 30, 2023

I've released new dev packages with the last fixes

@mvdbeek mvdbeek closed this Jan 30, 2023
@mvdbeek mvdbeek reopened this Jan 30, 2023
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Btw. with galaxyproject/tools-iuc#4830 we should be able to test planemo branches ... but it's a somewhat bigger PR.

@bernt-matthias bernt-matthias marked this pull request as ready for review January 30, 2023 19:35
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bernt-matthias commented Jan 30, 2023
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restore rst_invalid function
c0eb661 
used in planemo galaxyproject/planemo#1275

has been removed here galaxyproject#14588
@bernt-matthias bernt-matthias mentioned this pull request Jan 31, 2023
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Update requirements.txt
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We're doing a bad job at keeping the packages stable :(
@mvdbeek mvdbeek enabled auto-merge February 10, 2023 08:42
@mvdbeek mvdbeek changed the title bump galaxy packages to 22.05 Bump galaxy packages to 22.05 Feb 10, 2023
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Heureka.

@mvdbeek mvdbeek merged commit f55829c into galaxyproject:master Feb 10, 2023
@bernt-matthias bernt-matthias deleted the topic/22.05 branch February 10, 2023 10:54
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Any chance to get this released? Would like to get this 2 year old PR merged, but linting needs 22.05 as far as I see.

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mvdbeek commented Feb 10, 2023

Sure, https://pypi.org/project/planemo/0.75.5/

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@bernt-matthias @nsoranzo @mvdbeek