Bugs correction:
- major bug in dorado 0.8.0: "bug causing dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v2 to
call CpG contexts only and dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v2 to call all contexts" (see https://github.com/nanoporetech/dorado/blob/release-v0.8/CHANGELOG.md#081-3-oct-2024). - bug fix in snv filtering: filter was malformatted.
- remove ambiguity in wildcards between condition and paired samples for DMR