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Add environment setup instructions
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rhoadesScholar committed Feb 11, 2024
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Expand Up @@ -13,6 +13,29 @@ DaCapo has 4 major configurable components:

These are then combined in a single **dacapo.experiments.Run** that includes your starting point (whether you want to start training from scratch or continue off of a previously trained model) and stopping criterion (the number of iterations you want to train).

## Environment setup
If you have not already done so, you will need to install DaCapo. We recommend you do this by first creating a new environment and then installing DaCapo using pip.

```bash
conda create -n dacapo python=3.10
conda activate dacapo
```

Then, you can install DaCapo using pip, via GitHub:

```bash
pip install git+https://github.com/janelia-cellmap/dacapo.git
```

Or you can clone the repository and install it locally:

```bash
git clone https://github.com/janelia-cellmap/dacapo.git
cd dacapo
pip install -e .
```


## Config Store

To define where the data goes, create a dacapo.yaml configuration file. Here is a template:
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