Release v0.3.0

v0.3.0

Notes

1. Manuscript submission.
2. New plotting of archaeological metadata.
3. Improved parsing of BEAST trees.

Commits

• 3b8f53b3 update notes and changelog for v0.3.0
• 9a88f562 Remove lsd2 from install workflow
• 68d59861 checkpoint denmark metadata
• cce4a39e Remove plotting SNPs from default targets to test CI
• 409d678a new denmark and plague notebook changes
• 342170b5 new timeline for individuals
• ad3d996a more geographic stats
• e2f9e68b new geo stats
• ef9006fd automated updated
• 789bb0c5 prettier beast estimates file
• 04387e4c time dependency and tree rates update
• 13f81fdc new script newick to nextstrain
• 07aa3807 automated update
• f532276a use old 2.MED tree
• 6f764559 update branch lengths notebooks
• 77aaca79 update notebooks for mean rate
• e276513b new plotting for mean rate
• 4553d334 locus cov changes for main
• 78a1bc7a initialize bash shell for conda activate
• 11e26976 add lsd2 to dockerfile
• See CHANGELOG.md for additional commits.