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Plotting heatmap and thumbnails for test PANDA slides #634

Merged

harshita-s merged 25 commits intomainfrom hsharma/heatmap_panda

Jan 19, 2022

+299-28

Commits on Jan 6, 2022

heatmap and thumbnail output, deepmil module for panda
t-hsharma
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Commits on Jan 7, 2022

deepmil module panda subclass
t-hsharma
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Commits on Jan 10, 2022

heatmap of selected tiles with correct location
t-hsharma
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Commits on Jan 11, 2022

scaled and shifted rectangle coordinates
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slide dataset at container level
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Commits on Jan 12, 2022

Instantiate dataset class in basemil
t-hsharma
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Commits on Jan 13, 2022

dataset paths for AML
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fix merge conflicts
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heatmap utils selected
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fix mypy and flake8 errors
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mypy error resolved
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Commits on Jan 14, 2022

address PR comments
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flake8 errors resolved
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Commits on Jan 16, 2022

PR comments addressed
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add test for plots
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Commits on Jan 17, 2022

PR comments more
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test for heatmap
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tests for heatmap
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update and fix merge conflict
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add file comparison plot tests
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Commits on Jan 18, 2022

reverting test_dict values for other test with hardcoded values
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PR comments Valentina
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PR comments
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change colormap to reds
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remove redundant for loop
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