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35 Open 93 Closed
35 Open 93 Closed
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Issues list

To use the motus module for newer versions, you need to download it and import it with 'local import'
#154 opened Jul 15, 2022 by zckoo007
1
fd:12: hPutBuf: resource vanished (Broken pipe)
#153 opened Jun 22, 2022 by uloeber
custom pattern recognition load_fastq_directory
#145 opened Mar 3, 2021 by uloeber
1
Error ir mapping step better error message
#142 opened Dec 7, 2020 by chodarq
7
Feature request: Filter mapped reads by minimum match fraction enhancement
#139 opened Oct 12, 2020 by luispedro
Using collect on countables from mapstats gives a funny result
#138 opened Sep 18, 2020 by mettejoe
Better debug message for files missing for collect() better error message enhancement
#136 opened Apr 23, 2020 by unode
Introduce computation stages - validation, download, prepare, ... enhancement performance
#135 opened Mar 4, 2020 by unode
1
No HTML report is generated when using the parallel module bug help wanted
#133 opened Feb 27, 2020 by unode
2
Add read_length() to ShortRead type enhancement
#126 opened Dec 5, 2019 by unode
2
Broken pipe with samtools view upon conversion from minimap2 SAM -> BAM
#124 opened Oct 15, 2019 by unode
1
Implement readset return type types for modules enhancement
#119 opened Aug 20, 2019 by mkuhn
2
Inconsistent use of local import bug
#117 opened Aug 12, 2019 by unode
1
Reading .bz2 files fails to decompress or segfaults
#116 opened Jul 31, 2019 by unode
14
Update documentation for motus profiling to reflect motus2 documentation
#114 opened Jul 17, 2019 by theavanrossum
3
Allow collect()'ing when all processing is complete enhancement
#112 opened Jun 19, 2019 by unode
2
Add ability to strip sequences/qualities from SAM/BAM files good first issue help wanted
#102 opened Feb 28, 2019 by unode
7
Implement API to cleanup unnecessary files enhancement good first issue
#99 opened Feb 7, 2019 by unode
API for querying available versions of modules enhancement
#87 opened Oct 15, 2018 by unode
mapstats() should error with position sorted sam/bam files
#80 opened Sep 19, 2018 by unode
Improvements to qcstats (fastq, mapping) formats - explicit behavior? enhancement help wanted question
#75 opened Jun 26, 2018 by unode
2
Decouple stats machinery from HTML reporting enhancement
#74 opened Jun 26, 2018 by unode
Include file grouping information in fqstats enhancement
#73 opened Jun 19, 2018 by unode
as_reads should not require that BAM file be sorted enhancement help wanted
#72 opened Jun 19, 2018 by luispedro
Implement a setup phase for external modules enhancement
#71 opened Jun 13, 2018 by unode
@unode
ProTip! no:milestone will show everything without a milestone.